* gnu/packages/simulation.scm (python-dolfin-adjoint): Delete variable.
Change-Id: Ia2bec142747a44a74cf35145838c9c5d440a8a4b
---
gnu/packages/simulation.scm | 92 -------------------------------------
1 file changed, 92 deletions(-)
diff --git a/gnu/packages/simulation.scm b/gnu/packages/simulation.scm
index ebfe477265..161e6a85d4 100644
--- a/gnu/packages/simulation.scm
+++ b/gnu/packages/simulation.scm
@@ -1187,98 +1187,6 @@ (define-public python-pygmsh
command-line utility for mesh optimisation.")
(license license:gpl3+)))
-(define-public python-dolfin-adjoint
- (package
- (name "python-dolfin-adjoint")
- (version "2019.1.0")
- (source
- (origin
- (method git-fetch)
- (uri (git-reference
- (url "https://github.com/dolfin-adjoint/pyadjoint";)
- (commit version)))
- (file-name (git-file-name name version))
- (sha256
- (base32 "0xhy76a5f33hz94wc9g2mc5qmwkxfccbbc6yxl7psm130afp8lhn"))
- (modules '((guix build utils)))
- (snippet
- '(begin
- ;; One of the migration tests attempts to call openmpi
- ;; recursively and fails. See
- ;; https://bitbucket.org/mpi4py/mpi4py/issues/95. Run the
- ;; test sequentially instead.
- (with-directory-excursion "tests/migration/optimal_control_mms"
- (substitute* "test_optimal_control_mms.py"
- (("\\\"mpirun\\\", \\\"-n\\\", \\\"2\\\", ") "")))
- ;; Result files are regenerated in the check phase.
- (delete-file-recursively
- "tests/migration/viscoelasticity/test-results")))))
- (build-system pyproject-build-system)
- (arguments
- (list
- #:test-flags
- #~(list
- ;; Ignore tests which require missing packages and/or failed during
- ;; tests collection.
- "--ignore=tests/firedrake_adjoint/test_assignment.py"
- "--ignore=tests/firedrake_adjoint/test_burgers_newton.py"
- "--ignore=tests/firedrake_adjoint/test_dynamic_meshes.py"
- "--ignore=tests/firedrake_adjoint/test_hessian.py"
- "--ignore=tests/firedrake_adjoint/test_reduced_functional.py"
- "--ignore=tests/firedrake_adjoint/test_shape_derivatives.py"
- "--ignore=tests/firedrake_adjoint/test_solving.py"
- "--ignore=tests/firedrake_adjoint/test_tlm.py"
- "--ignore=tests/migration/burgers_newton/test_burgers_newton.py"
- "--ignore=tests/migration/linear_solver/test_linear_solver.py"
-
"--ignore=tests/migration/optimization_scipy/test_optimization_scipy.py"
- "--ignore=tests/migration/projection/test_projection.py"
-
"--ignore=tests/migration/reduced_functional/test_reduced_functional.py"
- "--ignore=tests/migration/split/test_split.py"
- "-k" (string-append "not test_read_checkpoint"
- " and not
test_krylov_solver_preconditioner_function_ctrl"))
- #:phases
- #~(modify-phases %standard-phases
- (add-after 'build 'mpi-setup #$%openmpi-setup)
- (add-before 'check 'set-environment-variables
- (lambda _
- (setenv "HOME" (getcwd))))
- (add-after 'install 'install-doc
- (lambda _
- (let* ((doc (string-append #$output "/share/doc/" #$name "-"
#$version))
- (examples (string-append doc "/examples")))
- (mkdir-p examples)
- (copy-recursively "examples" examples))))
- ;; Remove 'sanity-check, because it tries to import
- ;; firedrake_adjoint after importing fenics_adjoint.
- ;; Both load a module named 'backend' and firedrake_adjoint
- ;; fails with an ImportError if it sees that the backend module
- ;; has already been loaded.
- (delete 'sanity-check))))
- (inputs
- (list fenics openmpi pybind11))
- (native-inputs
- (list pkg-config
- python-coverage
- python-decorator
- python-flake8
- python-pkgconfig
- python-pytest))
- (propagated-inputs
- (list python-scipy))
- (home-page "https://www.dolfin-adjoint.org";)
- (synopsis "Automatic differentiation library")
- (description
- "@code{python-dolfin-adjoint} is a solver of differential equations
-associated with a governing system and a functional of interest. Working from
-the forward model the solver automatically derives the discrete adjoint and
-tangent linear models. These additional models are key ingredients in many
-algorithms such as data assimilation, optimal control, sensitivity analysis,
-design optimisation and error estimation. The dolfin-adjoint project provides
-the necessary tools and data structures for cases where the forward model is
-implemented in @code{fenics} or
-@url{https://firedrakeproject.org,firedrake}.";)
- (license license:lgpl3)))
-
(define %commonroad-dont-install-license-at-root
#~(substitute* "setup.py"
(("data_files=\\[\\('.', \\['LICENSE.txt'\\]\\)\\],")
--
2.49.0
