Hi, cuir...@gnu.org (Cuirass) writes:
> <p>The build <b>python-phenograph.x86_64-linux</b> for specification > <b>master</b> is > broken. You can find the detailed information about this build <a > href="https://ci.guix.gnu.org/build/2736972/details";>here</a>.</p> > > https://ci.guix.gnu.org/build/2736972/details The failure reads: --8<---------------cut here---------------start------------->8--- =================================== FAILURES =================================== ___________________________ test_classify_generated ____________________________ cluster_dataset_generated = <tests.conftest.GeneratedClusterDataset object at 0x7ffdcfdb90f0> def test_classify_generated(cluster_dataset_generated): output, _ = classify( cluster_dataset_generated.train_set, cluster_dataset_generated.test_set ) actual = cluster_dataset_generated.test_labels > assert all([p == a for p, a in zip(output, actual)]) E assert False E + where False = all([True, True, False]) tests/test_classify.py:9: AssertionError ----------------------------- Captured stdout call ----------------------------- Finding 30 nearest neighbors using minkowski metric and 'auto' algorithm =============================== warnings summary =============================== phenograph/cluster.py:13 /tmp/guix-build-python-phenograph-1.5.7.drv-0/PhenoGraph-1.5.7/phenograph/cluster.py:13: DeprecationWarning: Please use `spmatrix` from the `scipy.sparse` namespace, the `scipy.sparse.base` namespace is deprecated. from scipy.sparse.base import spmatrix tests/test_classify.py::test_classify_generated tests/test_classify.py::test_classify_generated tests/test_classify.py::test_classify_generated tests/test_classify.py::test_classify_fixed tests/test_classify.py::test_classify_fixed tests/test_classify.py::test_classify_fixed tests/test_classify.py::test_random_walk_probabilities_fixed tests/test_classify.py::test_random_walk_probabilities_fixed tests/test_classify.py::test_random_walk_probabilities_fixed /tmp/guix-build-python-phenograph-1.5.7.drv-0/PhenoGraph-1.5.7/phenograph/classify.py:43: DeprecationWarning: Please use `bicgstab` from the `scipy.sparse.linalg` namespace, the `scipy.sparse.linalg.isolve` namespace is deprecated. sp.linalg.isolve.bicgstab(Lu, b.T.todense(), atol="legacy") for b in B.T -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html =========================== short test summary info ============================ FAILED tests/test_classify.py::test_classify_generated - assert False =================== 1 failed, 5 passed, 10 warnings in 3.48s =================== --8<---------------cut here---------------end--------------->8--- The test is probably flaky and should be reported upstream and disabled in our package meanwhile. -- Thanks, Maxim
