Hello, It seems that ‘update-cached-checkout’ fails to handle nested Git submodules, when a submodule itself has submodules:
--8<---------------cut here---------------start------------->8--- $ ./pre-inst-env guix refresh python-pytorch gnu/packages/machine-learning.scm:2872:13: python-pytorch would be upgraded from 1.11.0 to 1.12.0 $ ./pre-inst-env guix refresh -u python-pytorch Backtrace: In ice-9/eval.scm: 619:8 19 (_ #(#(#<directory (guile-user) 7f5a34cc2c80>))) In guix/ui.scm: 2238:7 18 (run-guix . _) 2201:10 17 (run-guix-command _ . _) In ice-9/boot-9.scm: 1752:10 16 (with-exception-handler _ _ #:unwind? _ # _) 1752:10 15 (with-exception-handler _ _ #:unwind? _ # _) In guix/store.scm: 659:37 14 (thunk) 2168:25 13 (run-with-store #<store-connection 256.99 7f5a212475f0> …) In guix/scripts/refresh.scm: 560:16 12 (_ _) In srfi/srfi-1.scm: 634:9 11 (for-each #<procedure 7f5a20eda4e0 at guix/scripts/ref…> …) In guix/scripts/refresh.scm: 309:22 10 (update-package _ #<package python-pytorch@1.11.0 gnu/…> …) In guix/upstream.scm: 475:10 9 (package-update/git-fetch _ _ #<<upstream-source> pack…> …) In guix/git.scm: 550:8 8 (latest-repository-commit #<store-connection 256.99 7f…> …) 472:7 7 (update-cached-checkout _ #:ref _ #:recursive? _ # _ # _ …) In srfi/srfi-1.scm: 634:9 6 (for-each #<procedure 7f5a265c7f30 at guix/git.scm:321…> …) In guix/git.scm: 333:20 5 (_ _) In srfi/srfi-1.scm: 634:9 4 (for-each #<procedure 7f5a266631e0 at guix/git.scm:321…> …) In guix/git.scm: 325:16 3 (_ _) In git/bindings.scm: 77:2 2 (raise-git-error _) In ice-9/boot-9.scm: 1685:16 1 (raise-exception _ #:continuable? _) 1685:16 0 (raise-exception _ #:continuable? _) ice-9/boot-9.scm:1685:16: In procedure raise-exception: Git error: failed to resolve path '/home/ludo/.cache/guix/checkouts/orwu3gj6brdg2ui6r2tl5me7plucokpvqvgbhe2yuo6jc2tovvha/third_party/gloo/third-party/googletest/.git': No such file or directory $ $ ls /home/ludo/.cache/guix/checkouts/orwu3gj6brdg2ui6r2tl5me7plucokpvqvgbhe2yuo6jc2tovvha/third_party/gloo/third-party/ ls: cannot access '/home/ludo/.cache/guix/checkouts/orwu3gj6brdg2ui6r2tl5me7plucokpvqvgbhe2yuo6jc2tovvha/third_party/gloo/third-party/': No such file or directory $ ls /home/ludo/.cache/guix/checkouts/orwu3gj6brdg2ui6r2tl5me7plucokpvqvgbhe2yuo6jc2tovvha/third_party/gloo/ cmake/ CODE_OF_CONDUCT.md docs/ LICENSE tools/ CMakeLists.txt CONTRIBUTING.md gloo/ README.md $ ls /home/ludo/.cache/guix/checkouts/orwu3gj6brdg2ui6r2tl5me7plucokpvqvgbhe2yuo6jc2tovvha/third_party/gloo/.gitmodules /home/ludo/.cache/guix/checkouts/orwu3gj6brdg2ui6r2tl5me7plucokpvqvgbhe2yuo6jc2tovvha/third_party/gloo/.gitmodules --8<---------------cut here---------------end--------------->8--- Ludo’.