Hi bug-apl,
 
I don't know why sqlite3 is not being found. In the following lines, 'buildapl' 
is a script that does ./configure ; make ; make install. The file 
'buildapl.runlog' is recording  the both standard out and standard error. Im 
not sure if this would also be a reason, but I am using bash, on Ubuntu.  
 
a64@a64-U46E:trunk$ which sqlite
/usr/bin/sqlite
 
a64@a64-U46E:trunk$ which sqlite3
/usr/bin/sqlite3
 
a64@a64-U46E:trunk$ grep sql buildapl
./configure --with-sqlite3=/usr/bin/sqlite > buildapl.runlog
 
a64@a64-U46E:trunk$ sudo ./buildapl
 
a64@a64-U46E:trunk$ grep SQL buildapl.runlog 
checking for SQLite3 library >= 3.0.0... not found
NOTE: the native function for accessing SQLite will not be built because
 your SQLite installation is missing or incomplete (see details above)
 
a64@a64-U46E:trunk$ pico buildapl     #edit to change to 'sqlite3'
 
a64@a64-U46E:trunk$ grep sql buildapl
 ./configure --with-sqlite3=/usr/bin/sqlite3 > buildapl.runlog
 
a64@a64-U46E:trunk$ sudo ./buildapl
 
a64@a64-U46E:trunk$ grep SQL buildapl.runlog 
checking for SQLite3 library >= 3.0.0... not found
NOTE: the native function for accessing SQLite will not be built because
 your SQLite installation is missing or incomplete (see details above)

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