Andreas Tille pushed to branch master at Debian Blends Team / med
Commits:
7c1a70ca by Andreas Tille at 2020-07-19T12:58:04+02:00
Add new dependencies
- - - - -
f4c3dde0 by Andreas Tille at 2020-07-19T22:16:01+02:00
Update UDD
- - - - -
2 changed files:
- covid-19_doc/bio_covid-19_dependencies_query
- covid-19_doc/bio_covid-19_dependencies_result
Changes:
=====================================
covid-19_doc/bio_covid-19_dependencies_query
=====================================
@@ -125,9 +125,11 @@ INSERT INTO covid19_packages VALUES
(DEFAULT,'flye'),
(DEFAULT,'freebayes'),
(DEFAULT,'gatk'),
+(DEFAULT,'python3-geneimpacts'),
(DEFAULT,'gffread'),
(DEFAULT,'python3-gffutils'),
(DEFAULT,'gindex'),
+(DEFAULT,'gjh_asl_json'),
(DEFAULT,'tigr-glimmer'),
(DEFAULT,'grabix'),
(DEFAULT,'graphmap2'),
@@ -146,6 +148,7 @@ INSERT INTO covid19_packages VALUES
(DEFAULT,'kraken2'),
(DEFAULT,'radiant'), -- == krona - Debian had to change the name
(DEFAULT,'lighter'),
+(DEFAULT,'longshot'),
(DEFAULT,'r-cran-lsd'),
(DEFAULT,'lumpy-sv'),
(DEFAULT,'ncbi-magicblast'),
@@ -226,6 +229,7 @@ INSERT INTO covid19_packages VALUES
(DEFAULT,'samclip'),
(DEFAULT,'samtools'),
(DEFAULT,'scrappie'),
+(DEFAULT,'scribl'),
(DEFAULT,'sepp'),
(DEFAULT,'python3-seqcluster'),
(DEFAULT,'seqlib'),
@@ -276,6 +280,7 @@ INSERT INTO covid19_packages VALUES
(DEFAULT,'python3-h5py'),
(DEFAULT,'python3-numpy'),
(DEFAULT,'python3-pandas'),
+(DEFAULT,'python3-sklearn'),
(DEFAULT,'python3-toolz'),
(DEFAULT,'python3-tornado')
;
=====================================
covid-19_doc/bio_covid-19_dependencies_result
=====================================
@@ -1,4 +1,4 @@
-Last-Update: Sat, 18 Jul 2020 14:01:13 +0200
+Last-Update: Sun, 19 Jul 2020 22:11:47 +0200
package | architectures | section |
releases | conda |
bio.tools | testsuite
--------------------------------+---------------------+----------+-----------------------------------------------------------+----------------------+--------------------+-------------------------------------
@@ -60,9 +60,11 @@ Last-Update: Sat, 18 Jul 2020 14:01:13 +0200
flye | | |
https://salsa.debian.org/med-team/flye | flye
| |
freebayes | amd64,arm64,ppc64el | main |
buster,bullseye,sid | freebayes
| freebayes | autopkgtest
gatk | | |
https://salsa.debian.org/med-team/gatk | gatk4
| |
+ python3-geneimpacts | all | main |
bullseye,sid | geneimpacts
| | autopkgtest-pkg-python
gffread | amd64,arm64,ppc64el | main |
bullseye,sid | gffread
| gffread | autopkgtest
python3-gffutils | all | main |
buster,bullseye,sid | gffutils
| GFFutils | autopkgtest
gindex | | |
https://salsa.debian.org/med-team/gindex |
| |
+ gjh_asl_json | | |
| |
|
tigr-glimmer | amd64,arm64,ppc64el | main |
buster,bullseye,sid | glimmer
| glimmer | autopkgtest
grabix | amd64,arm64,ppc64el | main |
buster,bullseye,sid | grabix
| | autopkgtest
graphmap2 | | |
https://salsa.debian.org/med-team/graphmap2 | graphmap
| |
@@ -81,6 +83,7 @@ Last-Update: Sat, 18 Jul 2020 14:01:13 +0200
kraken2 | amd64,arm64,ppc64el | main |
bullseye,sid | kraken2
| kraken | autopkgtest
radiant | all | main |
buster,bullseye,sid |
| krona |
lighter | amd64 | main | sid
| lighter |
|
+ longshot | | |
| |
|
r-cran-lsd | all | main |
bullseye,sid | r-lsd
| | autopkgtest-pkg-r
lumpy-sv | amd64,arm64,ppc64el | main | sid
| lumpy-sv |
| autopkgtest
ncbi-magicblast | | |
https://salsa.debian.org/med-team/ncbi-magicblast | magicblast
| |
@@ -161,6 +164,7 @@ Last-Update: Sat, 18 Jul 2020 14:01:13 +0200
samclip | all | main |
bullseye,sid | samclip
| | autopkgtest
samtools | amd64,arm64,ppc64el | main |
buster,bullseye,sid | samtools
| samtools | autopkgtest
scrappie | | |
https://salsa.debian.org/med-team/scrappie | scrappie
| |
+ scribl | | |
| |
|
sepp | | |
https://salsa.debian.org/med-team/sepp | sepp
| |
python3-seqcluster | | |
https://salsa.debian.org/med-team/python-seqcluster |
| |
seqlib | | |
| |
|
@@ -179,9 +183,9 @@ Last-Update: Sat, 18 Jul 2020 14:01:13 +0200
rna-star | amd64,arm64,ppc64el | main |
buster,bullseye,sid | star
| star | autopkgtest
streamformatics | | |
| |
|
strelka | | |
https://salsa.debian.org/med-team/strelka | strelka
| |
- python3-streamz | all | main | sid
| |
| autopkgtest
- tabix | amd64,arm64,ppc64el | main |
buster,bullseye,sid | htslib
| |
+ python3-streamz | all | main |
bullseye,sid |
| | autopkgtest
tabix | amd64,arm64,ppc64el | main |
buster,bullseye,sid | htslib
| | autopkgtest
+ tabix | amd64,arm64,ppc64el | main |
buster,bullseye,sid | htslib
| |
tiddit | amd64,arm64,ppc64el | main |
bullseye,sid | tiddit
| | autopkgtest
tombo | amd64,arm64 | main | sid
| ont-tombo |
| autopkgtest
tophat-recondition | all | main |
bullseye,sid |
| |
@@ -212,7 +216,8 @@ Last-Update: Sat, 18 Jul 2020 14:01:13 +0200
python3-numpy | amd64,arm64,ppc64el | main |
buster,bullseye,sid |
| | autopkgtest
python3-numpy | amd64,arm64,ppc64el | main |
buster,bullseye,sid |
| | autopkgtest
python3-pandas | all | main |
buster,bullseye,sid |
| | autopkgtest
+ python3-sklearn | all | main |
buster,bullseye,sid |
| | autopkgtest
python3-toolz | all | main |
buster,bullseye,sid |
| | autopkgtest
python3-tornado | amd64,arm64,ppc64el | main |
buster,bullseye,sid |
| | autopkgtest
-(212 Zeilen)
+(217 Zeilen)
View it on GitLab:
https://salsa.debian.org/blends-team/med/-/compare/430fce13f29c735870381a18dc0df4cf97b828d5...f4c3dde0748063772a48e88a330c778d891d2b05
--
View it on GitLab:
https://salsa.debian.org/blends-team/med/-/compare/430fce13f29c735870381a18dc0df4cf97b828d5...f4c3dde0748063772a48e88a330c778d891d2b05
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