Andreas Tille pushed to branch master at Debian Blends Team / med
Commits: eeb4d005 by Andreas Tille at 2019-12-02T09:35:52Z Drop fastx-toolkit and libgtextutils since unmaintained and libgtextutils has issued with gcc9 - - - - - 5 changed files: - debian/changelog - tasks/bio - tasks/bio-dev - tasks/bio-ngs - tasks/cloud Changes: ===================================== debian/changelog ===================================== @@ -1,3 +1,10 @@ +debian-med (3.5.1) UNRELEASED; urgency=medium + + * Drop fastx-toolkit and libgtextutils since unmaintained and + libgtextutils has issued with gcc9 + + -- Andreas Tille <[email protected]> Mon, 02 Dec 2019 09:54:51 +0100 + debian-med (3.5) unstable; urgency=medium * Python2 packages only suggested ===================================== tasks/bio ===================================== @@ -46,7 +46,7 @@ Remark: Dead upstream old unmaintained version remained at code.google.com. Please drop the maintainer a note if you have any news of this project. -Recommends: boxshade, fastx-toolkit, gff2aplot, muscle, sim4, sibsim4, tabix, wise +Recommends: boxshade, gff2aplot, muscle, sim4, sibsim4, tabix, wise Recommends: maqview ===================================== tasks/bio-dev ===================================== @@ -300,8 +300,6 @@ Recommends: python3-freecontact Recommends: python3-pymummer -Suggests: libgtextutils-dev - Recommends: libkmer-dev Recommends: libsnp-sites1-dev ===================================== tasks/bio-ngs ===================================== @@ -11,7 +11,6 @@ Recommends: blasr, daligner, mhap, - fastx-toolkit, last-align, wham-align, maq, @@ -106,8 +105,6 @@ Recommends: fastp Recommends: fastqc -Recommends: fastx-toolkit - Recommends: flexbar Recommends: fml-asm ===================================== tasks/cloud ===================================== @@ -26,7 +26,7 @@ Recommends: amap-align, blast2, biosquid, boxshade, cassiopee, cdbfasta, X-End-Category: Sequence alignments and related programs. X-Begin-Category: High throughput sequencing -Recommends: bamtools, bedtools, fastx-toolkit, flexbar, picard-tools, samtools, +Recommends: bamtools, bedtools, flexbar, picard-tools, samtools, tabix, vcftools Comment: Processing View it on GitLab: https://salsa.debian.org/blends-team/med/commit/eeb4d0058afe95ad3ac7b94cfaaf73737e3746ac -- View it on GitLab: https://salsa.debian.org/blends-team/med/commit/eeb4d0058afe95ad3ac7b94cfaaf73737e3746ac You're receiving this email because of your account on salsa.debian.org.
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