Andreas Tille pushed to branch master at Debian Blends Team / med
Commits: c80e5cf2 by Andreas Tille at 2018-10-26T09:54:50Z tracerunner now in Git - - - - - 1 changed file: - tasks/bio Changes: ===================================== tasks/bio ===================================== @@ -1085,6 +1085,8 @@ Recommends: tn-seqexplorer Recommends: toil +Recommends: tracetuner + Recommends: transrate-tools Recommends: treeview @@ -1287,35 +1289,6 @@ Pkg-Description: draw phylogenetic trees PhpPhylotree is a web application that is able to draw phylogenetic trees. It produces an SVG (Scalable Vector Graphic) file from phylip/newick tree files. -Recommends: tracetuner -Homepage: https://sourceforge.net/p/tracetuner -License: GPL; but US Patent #6,681,186 -Pkg-Description: DNA sequencing and trace processing - TraceTuner is a DNA sequencing quality value, base calling and trace - processing software application originally developed by Paracel, - Inc. While providing a flexible interface and capability to adopt the - "pure" base calls produced by Phred, KB or any other "original" - caller, it offers competitive features not currently available in - other tools, such as customized calibration of quality values, - advanced heterozygote and mixed base calling and deconvolving the - "mixed" electropherograms resulting from the presence of indels into - a couple of "pure" electropherograms. Previous versions of TraceTuner - were used by Celera Genomics to process over 27 million reads from - both Drosophila and human genome projects and by Applied Biosystems, - as a component of its SNP detection and genotyping software product - SeqScape. TraceTuner implements an advanced peak processing - technology for resolving overlapping peaks of the same dye color into - individual, or "intrinsic" peaks. This technology was protected by US - Patent #6,681,186. Currently, TraceTuner is an open source software, - which has been used by J. Craig Venter Institute's DNA Sequencing and - Resequencing pipelines. - . - The TraceTuner Software (Copyright 1999-2003, Paracel, Inc. All - rights reserved.) (the "Software") is covered by US Patent #6,681,186 and is - being made available free of charge by Applera Corporation subject to the terms - and conditions of the GNU General Public License, version 2, as published by the - Free Software Foundation (the "GNU General Public License"). - Recommends: twain Homepage: http://cbcb.umd.edu/software/pirate/twain/twain.shtml License: Open Source View it on GitLab: https://salsa.debian.org/blends-team/med/commit/c80e5cf29453a3e76ff0909dfb1a106b37f249ce -- View it on GitLab: https://salsa.debian.org/blends-team/med/commit/c80e5cf29453a3e76ff0909dfb1a106b37f249ce You're receiving this email because of your account on salsa.debian.org.
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