Steffen Möller pushed to branch master at Debian Blends Team / med
Commits: 55132ead by Steffen Möller at 2018-09-05T12:11:09Z ELPH is now in distribution Also Updated upstream URL of Lucy. - - - - - 1 changed file: - tasks/bio Changes: ===================================== tasks/bio ===================================== @@ -78,6 +78,8 @@ Recommends: ghmm, hmmer Recommends: exonerate +Recommends: elph + Recommends: dialign Recommends: dialign-tx @@ -1690,24 +1692,6 @@ Pkg-Description: The microRNA sequence database It is possible that mirbase will not be a package from the main archive, but will be autogenerated as part of a larger data packaging effort. -Recommends: elph -Homepage: http://www.cbcb.umd.edu/software/ELPH/ -License: Artistic -Pkg-Description: motif finder that can find ribosome binding sites, exon splicing enhancers, or regulatory sites - ELPH (Estimated Locations of Pattern Hits) is a general-purpose Gibbs - sampler for finding motifs in a set of DNA or protein sequences. The - program takes as input a set containing anywhere from a few dozen to - thousands of sequences, and searches through them for the most common - motif, assuming that each sequence contains one copy of the motif. We - have used ELPH to find patterns such as ribosome binding sites (RBSs) - and exon splicing enhancers (ESEs). See below for instructions on - downloading the complete system, including source code. - . - An online tool that uses ELPH output for identifying exon splicing - enhancers can be found at - http://www.cbcb.umd.edu/software/SeeEse/index.html . -Remark: Other sequence analysis tools (http://www.cbcb.umd.edu/software/) - X-Recommends: repeatfinder X-Homepage: http://www.cbcb.umd.edu/software/RepeatFinder/ X-License: Artistic @@ -1951,7 +1935,7 @@ Remark: This package ships with BioLinux http://envgen.nox.ac.uk/biolinux.html. redistribution of their software. Someone please go for it. Recommends: lucy -Homepage: http://rcc.uga.edu/applications/bioinformatics/lucy.html +Homepage: http://lucy.sourceforge.net/ License: GPL Responsible: BioLinux - Dan Swan <[email protected]> Pkg-URL: http://nebc.nox.ac.uk/bio-linux/dists/unstable/bio-linux/binary-i386/ View it on GitLab: https://salsa.debian.org/blends-team/med/commit/55132eadd15636faad18298453f8f96c454bd552 -- View it on GitLab: https://salsa.debian.org/blends-team/med/commit/55132eadd15636faad18298453f8f96c454bd552 You're receiving this email because of your account on salsa.debian.org.
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