Steffen Möller pushed to branch master at Debian Blends Team / med
Commits: 216e88f0 by Steffen Möller at 2018-07-04T09:56:20+00:00 Update bio - omegamap and sweed are in salsa - - - - - 1 changed file: - tasks/bio Changes: ===================================== tasks/bio ===================================== --- a/tasks/bio +++ b/tasks/bio @@ -22,6 +22,11 @@ Recommends: hyphygui, hyphy-mpi | hyphy-pt Recommends: spread-phy +Recommends: omegamap +Remark: This package ships with BioLinux http://envgen.nox.ac.uk/biolinux.html + +Recommends: sweed + X-End-Category: Phylogenetic analysis Recommends: phylip @@ -2199,26 +2204,6 @@ Remark: This package ships with BioLinux http://envgen.nox.ac.uk/biolinux.html this and so it might make soem sense to list it here - further investigation is needed. -Recommends: omegamap -Homepage: http://www.danielwilson.me.uk/software.html -License: to be clarified -Responsible: BioLinux - Stewart Houten <[email protected]> -Pkg-URL: http://nebc.nox.ac.uk/bio-linux/dists/unstable/bio-linux/binary-i386/ -Pkg-Description: detecting natural selection and recombination in DNA or RNA sequences - OmegaMap is a program for detecting natural selection and - recombination in DNA or RNA sequences. It is based on a model of - population genetics and molecular evolution. The signature of natural - selection is detected using the dN/dS ratio (which measures the - relative excess of non-synonymous to synonymous polymorphism) and the - signature of recombination is detected from the patterns of linkage - disequilibrium. The model and the method of estimation are described - in - Wilson, D. J. and G. McVean (2006) - Estimating diversifying selection and functional constraint in the - presence of recombination. - Genetics doi:10.1534/genetics.105.044917. -Remark: This package ships with BioLinux http://envgen.nox.ac.uk/biolinux.html - Recommends: partigene Homepage: http://www.nematodes.org/bioinformatics/PartiGene/ License: GPL View it on GitLab: https://salsa.debian.org/blends-team/med/commit/216e88f016714cc5733e3688a8e11a095b6a2ac5 -- View it on GitLab: https://salsa.debian.org/blends-team/med/commit/216e88f016714cc5733e3688a8e11a095b6a2ac5 You're receiving this email because of your account on salsa.debian.org.
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