Andreas Tille pushed to branch master at Debian Blends Team / med
Commits: 9e0836c7 by Andreas Tille at 2018-05-24T08:12:36+02:00 python-casmoothing is removed from Debian - - - - - fc0bc931 by Andreas Tille at 2018-05-24T08:12:36+02:00 seqmagick - - - - - 27c84ae9 by Andreas Tille at 2018-05-24T08:12:36+02:00 Drop manual information of trace2dbest since it is now in Git - - - - - 6233e174 by Andreas Tille at 2018-05-24T08:13:24+02:00 Add r-cran-metamix - - - - - 2 changed files: - tasks/bio - tasks/imaging-dev Changes: ===================================== tasks/bio ===================================== --- a/tasks/bio +++ b/tasks/bio @@ -884,6 +884,8 @@ Suggests: r-bioc-annotationhub, r-bioc-aroma.light, r-bioc-ensembldb, r-bioc-go. Suggests: r-bioc-savr +Recommends: r-cran-metamix + Suggests: r-cran-qqman Recommends: r-cran-rotl @@ -948,6 +950,8 @@ Recommends: seer Recommends: segemehl +Recommends: seqmagick + Recommends: seqprep Recommends: seqsero @@ -2397,27 +2401,6 @@ Remark: for the Linux version Remark: This package ships with BioLinux http://envgen.nox.ac.uk/biolinux.html Recommends: trace2dbest -Homepage: http://www.nematodes.org/bioinformatics/trace2dbEST/ -License: GPL -Responsible: BioLinux - Bela Tiwari <[email protected]> -Pkg-URL: http://nebc.nox.ac.uk/bio-linux/dists/unstable/bio-linux/binary-i386/ -Pkg-Description: process trace files into dbEST submissions - Trace2dbest is part of the PartiGene pipeline. - . - Trace2dbest takes a series of sequence traces and converts them into - basecalled files. It also creates files in the appropriate format for - submission to dbEST and allows you to submit them directly if your - machine is configured to allow mailing to external sites. The output - from trace2dbest can be used as input to the PartiGene program. - . - Trace2dbEST process raw sequenceing chromatograph trace files from - EST projects into quality-checked sequences, ready for submission to - dbEST. trace2dbEST guides you through the creation of all the - necessary files for submission of ESTs to dbEST. trace2dbest makes - use of other software (available free under academic licence) that - you will need to have installed, namely phred, cross_match and - (optionaly) BLAST. -Remark: This package ships with BioLinux http://envgen.nox.ac.uk/biolinux.html Recommends: profit WNPP: 525428 ===================================== tasks/imaging-dev ===================================== --- a/tasks/imaging-dev +++ b/tasks/imaging-dev @@ -39,8 +39,6 @@ Recommends: python-nipype Recommends: python-nitime -Recommends: python-casmoothing - Recommends: libvia-dev Recommends: odin View it on GitLab: https://salsa.debian.org/blends-team/med/compare/4d77c6c07f7ac005f88b9bb1b4a20ab66a839a5b...6233e17416da4aaf925c40b5bd1f223dad0732f9 -- View it on GitLab: https://salsa.debian.org/blends-team/med/compare/4d77c6c07f7ac005f88b9bb1b4a20ab66a839a5b...6233e17416da4aaf925c40b5bd1f223dad0732f9 You're receiving this email because of your account on salsa.debian.org.
_______________________________________________ Blends-commit mailing list [email protected] https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/blends-commit
