biointelligence
*26th dec 2009*
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*Microarray techniques produce large amounts of data in many different
formats and experiment sizes are growing with more samples analysed in each
experiment. Samples are collected over long time and microarray analysis is
performed asynchronously and re-analysed as more samples are hybridised.
Systematic use of collected data requires tracking of biomaterials, array
information, raw data, and assembly of annotations. Particularly for
microarray service facilities, where researchers deposit samples for
experimentation, information tracking becomes vital for a subsequent data
delivery back to the researchers. To meet the information tracking and data
analysis challenges involved in microarray experiments BASE has been
implemented.*

*BASE (Bioarray Software Environment) is a comprehensive free web-based
database solution for the massive amounts of data generated by microarray
analysis. It is a MIAME (Minimum Information About a Microarray Experiment
guidelines) compliant application designed for microarray laboratories
looking for a single point of storage for all information related to their
microarray experimentation. BASE is a multi-user local data repository that
features a web browser user interface, laboratory information management
system (LIMS) for biomaterials and array production, annotations,
hierarchical overview of analysis, and integrates tools like MultiExperiment
Viewer (MEV) and GenePattern.*

*BASE is an annotable microarray data repository and analysis application
providing researchers with efficient information management and analysis.
BASE stores all microarray experiment related data, biomaterial information,
and annotations regardless if analysis tools for specific techniques or data
formats are readily available. As new techniques becomes available software
applications should be expendable and modifiable to support changed needs.
Moreover, it is an open source software and is freely available.*

*BASE website: **HTTP://base.thep.lu.se*



Regards,
Team Biointelligence
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*Biointelligence*
*Getting started with biosciences*
Website: www.biointelligence.in
Email: [email protected]
Tel: +91-731-425-7930
*P  **Please consider the environment before printing this email. Thank you.
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