Hi, First of all is it a homo trimer?
If yes then model the monomer and dock it with itself .. you will get complex 1 and then the initial modelled structure with the docked complex 1 ... you will get the trimeric structure.. Since u r modelling , i assume you dont know which residues would form the interface. Hence you could filter some docked poses and see which of them would u like to consider.. Gramm has an option for creating homo dimers ... hence it would be ideal for u .. On Wed, Oct 1, 2008 at 10:43 AM, ishwar chandra <[EMAIL PROTECTED]> wrote: > Hi all, > Warm Greetings. > Can anuone tell me how should i model trimeric structure of protein using > modeller. If anyone is having any paper regarding modelling the trimeric > structure modelling using modeller then please send it. Waiting for your > replies. Thanks > > with best regards > from ishwar > > > > -- Satish Balakrishnan +91-992-0823777 --~--~---------~--~----~------------~-------~--~----~ Join Biofriend New forum to reduce email load. post your questions on new blog http://cbclickbank.com/biofriend/ Please visit this link & send your friends too ========================================= http://www.cbclickbank.com/bioinformatics/company.htm Read message on web - Subject - " No email " & email us Remove from group - Subject - " unsubscribe me " & email us for more information visit http://www.cbclickbank.com/bioinformatics/giudence.htm We assure that your query we would answer within 24 Hrs. post message send email - [email protected] -~----------~----~----~----~------~----~------~--~---
