Installing GO.db or org.Hs.eg.db fail with the error
ERROR: lazy loading failed for package 'GO.db'
This happens with
BiocManager::install("GO.db")
and when installing by hand.
> install.packages("C:/Users/margo/AppData/Local/Temp/RtmpSe8bvM/downloaded_packages/GO.db_3.21.0.tar.gz",
> repos = NULL, type = "source")
Installing package into ‘C:/Users/margo/AppData/Local/R/win-library/4.5’
(as ‘lib’ is unspecified)
* installing *source* package 'GO.db' ...
** this is package 'GO.db' version '3.21.0'
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
ERROR: lazy loading failed for package 'GO.db'
* removing 'C:/Users/margo/AppData/Local/R/win-library/4.5/GO.db'
Warning message:
In
utils::install.packages("C:/Users/margo/AppData/Local/Temp/RtmpSe8bvM/downloaded_packages/GO.db_3.21.0.tar.gz",
:
installation of package
‘C:/Users/margo/AppData/Local/Temp/RtmpSe8bvM/downloaded_packages/GO.db_3.21.0.tar.gz’
had non-zero exit status
Installing by hand allowed to catch one issue related to xml2 source
installation.
> sessionInfo()
R version 4.5.1 (2025-06-13 ucrt)
Platform: x86_64-w64-mingw32/x64
Running under: Windows 11 x64 (build 26100)
Matrix products: default
LAPACK version 3.12.1
locale:
[1] LC_COLLATE=English_Belgium.utf8 LC_CTYPE=English_Belgium.utf8
[3] LC_MONETARY=English_Belgium.utf8 LC_NUMERIC=C
[5] LC_TIME=English_Belgium.utf8
time zone: Europe/Brussels
tzcode source: internal
attached base packages:
[1] stats graphics grDevices utils datasets methods base
loaded via a namespace (and not attached):
[1] BiocManager_1.30.26 compiler_4.5.1 fastmap_1.2.0
[4] cli_3.6.5 htmltools_0.5.8.1 tools_4.5.1
[7] rstudioapi_0.17.1 yaml_2.3.10 rmarkdown_2.30
[10] knitr_1.50 xfun_0.53 digest_0.6.37
[13] rlang_1.1.6 evaluate_1.0.5
Any idea?
Thank you in advance,
Laurent
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