Hi Andres, Thank you for your answer. When I realized the first push on the 10th of October (1.7.1), I think the problem for kjohnson3 and taishan was how I called the bibliography in my .Rnw vignette (even if I still don't know why it was a problem only on kjohnson3 and taishan). So I changed the method, which is the same used by the Bioconductor package BiocStyle. The new push realized on the 20th of October (1.7.2) seems to work because kjohnson3 does not alternate between 'OK' and 'ERROR' anymore. I do not know yet if this new method works on taishan because "build" is still fixed on (1.7.1) unlike "install". But I suppose I will have the answer tonight or tomorrow.
I just hope my package will not be considered deprecated. Sincerely yours, Rodolphe Le ven. 24 oct. 2025 à 22:45, Andres Wokaty <[email protected]> a écrit : > Hi Rodolphe, > > I'm not sure why there is some fluxuation. I see that it is currently > passing on kjohnson3. I've tagged taishan's maintainer on the #arm-linux > channel of our Zulip, which you are welcome to follow at > https://community-bioc.zulipchat.com/#narrow/channel/507633-arm-linux/topic//with/545824051 > . > > Andres Wokaty (they/them) > > Waldron Lab at CUNY SPH > Bioconductor Core Team > ------------------------------ > *From:* Bioc-devel <[email protected]> on behalf of > Rodolphe Loubaton <[email protected]> > *Sent:* Sunday, October 19, 2025 11:29 AM > *To:* [email protected] <[email protected]> > *Subject:* [Bioc-devel] kjohnson3 alternates between OK and 'Error' for > build check > > * This email originates from a sender outside of CUNY. Verify the sender > before replying or clicking on links and attachments. * > > Hi, > > I am the maintainer of the R package MultiRNAflow. > I recently pushed an update of my package. > > My package passed the install and build check realized by the computers > - *nebbiolo2* [Linux (Ubuntu 24.04.3 LTS) / x86_64] > - *lconway* [macOS 12.7.6 Monterey / x86_64] > > My package pass the install check for *kjohnson3* [macOS 13.7.7 Ventura / > arm64] and *taishan* [Linux (openEuler 24.03 LTS) / aarch64] but the build > check alternates between 'OK' and 'ERROR' for the last 7-8 days for > *kjohnson3*. > > The error message is > > > *Running 'texi2dvi' on 'MultiRNAflow_vignette-knitr.tex' > failed.Messages:/opt/R/arm64/bin/texi2dvi: biber failed* > > It seems *kjohnson3* and *taishan *struggle with bibliography when pdf is > created. > > Why my package pass successfully *nebbiolo2* and *lconway* check but > alternates between 'OK' and 'ERROR' for *kjohnson3* ? > > Sincerely yours, > > Rodolphe Loubaton > > [[alternative HTML version deleted]] > > _______________________________________________ > [email protected] mailing list > > https://urldefense.com/v3/__https://stat.ethz.ch/mailman/listinfo/bioc-devel__;!!LRXxDv2l!VUNPVsMUX5aj019xL7TSrxiyzQmDM169sP76jNU46SXeS_Z4szhFLlOTBxIEOvW_udAzLa2Bh7StRY3DVZRzzMiC860lQOjr8YCU0A$ > [[alternative HTML version deleted]] _______________________________________________ [email protected] mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
