Yes, I managed to solve it now. It was a bug introduced four years ago that now broke the build, but it might have been that when I fixed another bug I pushed the old bug into the bioconductor repository (perhaps it was previously in my own github only). This is why I got so confused.
Best, Kaur On Mon, Oct 13, 2025 at 5:03 PM Vincent Carey <[email protected]> wrote: > I gather that this is resolved? If not please provide full > sessionInfo after the > error is triggered. > > On Mon, Oct 13, 2025 at 9:56 AM Kaur Alasoo <[email protected]> wrote: > > > > Hello, > > > > I am the maintainer of the wiggleplotr package and I have an error in > > the vignette that I cannot seem to figure out. > > > > When I look at the build report ( > > > https://bioconductor.org/checkResults/devel/bioc-LATEST/wiggleplotr/nebbiolo2-buildsrc.html > ) > > I see the following error: > > > > Quitting from wiggleplotr.Rmd:65-67 [unnamed-chunk-5] > > > ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ > > <error/rlang_error> > > Error in `plotTranscripts()`: > > ! object 'ccds' not found > > --- > > Backtrace: > > ▆ > > 1. └─wiggleplotr::plotTranscripts(...) > > > ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ > > > > I can reproduce this error when I run R CMD build on my computer. > However, > > when I try to debug the code interactively in R then everything works > fine. > > I've not made any changes to the code or the package data outside the > > vignette. > > > > Is there something obvious that I am missing? > > > > Best, > > Kaur > > > > [[alternative HTML version deleted]] > > > > _______________________________________________ > > [email protected] mailing list > > https://stat.ethz.ch/mailman/listinfo/bioc-devel > > -- > The information in this email is intended only for the...{{dropped:14}} _______________________________________________ [email protected] mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
