Hi Lis, I guess you could temporarily disable upset plots, as was done here: https://github.com/neurogenomics/EpiCompare/pull/158
Best, Oleksii On Thu, 25 Sept 2025 at 11:50, Lisi Arend via Bioc-devel < [email protected]> wrote: > Dear all, > > my package PRONE, available on Bioconductor, is currently failing to build > under Bioconductor versions 3.21 and 3.22 due to an incompatibility between > ComplexUpset and ggplot2 (≥ 4.4.0). A related issue has already been > reported here: krassowski/complex-upset#213 < > https://github.com/krassowski/complex-upset/issues/213>. > > Here is the bild/check reports of PRONE for 3.21: > https://bioconductor.org/checkResults/release/bioc-LATEST/PRONE/kunpeng2-buildsrc.html > > I would appreciate advice on possible workarounds to ensure that PRONE > remains accessible both in Bioconductor 3.21 and in the upcoming 3.22 > release (October). > Best, > Lis Arend >  > Lis Arend > PhD Student > > E-mail: [email protected] > Web:http://daisybio.de > > Data Science in Systems Biology > TUM School of Life Sciences > Technical University of Munich > > Maximus-von-Imhof Forum 3 > 85354 Freising > Germany > > > > _______________________________________________ > [email protected] mailing list > https://stat.ethz.ch/mailman/listinfo/bioc-devel > [[alternative HTML version deleted]] _______________________________________________ [email protected] mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
