The Bioconductor Team is continuing to identify packages that will be deprecated in the next release to allow for the Bioconductor community to respond accordingly. This is the current list of deprecated packages for Bioc 3.22.
It should be noted, we did try to reach out to these package maintainers multiple times and they were either unresponsive or had emails bounce. We encourage anyone that is familiar with a package maintainer on this list to reach out to them and notify them directly. Packages can be un-deprecated if a maintainer fixes the package to build/check cleanly before the next release and requests un-deprecation on the [email protected] mailing list Do not un-deprecate a package yourself. You must request un-deprecation from the Bioconductor core team at [email protected]. We will not recognize a self un-deprecation Software User Requested: DEP gpuMagic hiAnnotator hiReadsProcessor interactiveDisplay interactiveDisplayBase Repitools rRDP Streamer Software Unresponsive: bgx BiGGR biodbHmdb biodbNci biodbNcbi biodbUniprot ccmap CellScore CINdex cisPath Harshlight hypeR lapmix LinTInd lute MADSEQ MAST oppti PhenStat qckitfastq ReactomeGraph4R Rfastp rGADEM SARC seqArchR seqArchRplus seqTools TitanCNA TransView traviz XNAString Experiment Data Requested: rRDPData Experiment Data Unresponsive: curatedCRCData Workflows Requested: spicyWorkflow There may be a few others added to the list prior to the release. We will announce any further changes or additions. Lori Kern Bioconductor Core Team Roswell Park Comprehensive Cancer Center Department of Biostatistics & Bioinformatics Elm & Carlton Streets Buffalo, New York 14263 This email message may contain legally privileged and/or confidential information. If you are not the intended recipient(s), or the employee or agent responsible for the delivery of this message to the intended recipient(s), you are hereby notified that any disclosure, copying, distribution, or use of this email message is prohibited. If you have received this message in error, please notify the sender immediately by e-mail and delete this email message from your computer. Thank you. [[alternative HTML version deleted]] _______________________________________________ [email protected] mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
