Dear all,
I’m encountering the following error when loading the pbmc_multimodal.h5seurat
file in RStudio. All required libraries are installed and loaded:
The output proceeds as expected until the following error occurs and the
reference won't load. I tried to load without image and with specific assay too
but nothing works:"assay = "SCT", assay.images = FALSE"
> library(Seurat)
> library(SeuratDisk)
> library(rhdf5)> reference <-
> LoadH5Seurat("/home/local/BICR/hjabeen/QC/Results/pbmc_multimodal.h5seurat")Validating
> h5Seurat fileInitializing ADT with dataAdding counts for ADTAdding variable
> feature information for ADTAdding miscellaneous information for
> ADTInitializing SCT with dataAdding counts for SCTAdding variable feature
> information for SCTAdding miscellaneous information for SCTAdding reduction
> apcaAdding cell embeddings for apcaAdding feature loadings for apcaAdding
> miscellaneous information for apcaAdding reduction aumapAdding cell
> embeddings for aumapAdding miscellaneous information for aumapAdding
> reduction pcaAdding cell embeddings for pcaAdding feature loadings for
> pcaAdding miscellaneous information for pcaAdding reduction spcaAdding cell
> embeddings for spcaAdding feature loadings for spcaAdding miscellaneous
> information for spcaAdding reduction umapAdding cell embeddings for
> umapAdding miscellaneous information for umapAdding reduction wnn.umapAdding
> cell embeddings for wnn.umapAdding miscellaneous information for
> wnn.umapAdding graph wknnAdding graph wsnnError in unlist(x = assays.images,
> index$global$images) : 'recursive' must be a length-1 vector
I would greatly appreciate any suggestions.
Many thanks in advance for your help!
Best regards,HiraSchool of Cancer SciencesUniversity of Glasgow, Scotland
[[alternative HTML version deleted]]
_______________________________________________
Bioc-devel@r-project.org mailing list
https://stat.ethz.ch/mailman/listinfo/bioc-devel
