Ideally the RELEASE_3_20 branch should build and check without TIMEOUT/ERROR as well as devel. This is to ensure users on that branch have working code for their version of R since Bioconductor releases are closely associated with a version of R. If there were changes pushed to the devel branch that fixed the code they should also be pushed to RELEASE_3_20; if not it may be intermittent or temporary that could clear up on its own. The deadline for fixing release is this coming Monday March 31 after which the code will be frozen.
Lori Shepherd - Kern Bioconductor Core Team Roswell Park Comprehensive Cancer Center Department of Biostatistics & Bioinformatics Elm & Carlton Streets Buffalo, New York 14263 ________________________________ From: Bioc-devel <bioc-devel-boun...@r-project.org> on behalf of Samuel Granjeaud IR/Inserm <samuel.granje...@inserm.fr> Sent: Thursday, March 27, 2025 4:47 PM To: bioc-devel@r-project.org <bioc-devel@r-project.org> Subject: [Bioc-devel] segmentSeq problems reported for BioC 3.20 but not BioC 3.21: is there a need to change the code? Hi, Timeouts appear with BioC 3.20. They are no more present in 3.21. So, I don't think I need to change code. Do you agree? Best, Samuel BTW, the link /help/mailing-list/ should be replaced in the mail to /help/support/ Le 2025-02-24 � 18:15, bbs-nore...@bioconductor.org a �crit : > [This is an automatically generated email. Please don't reply.] > > Hi segmentSeq maintainer, > > According to the Multiple platform build/check report for BioC 3.20, > the segmentSeq package has the following problem(s): > > o TIMEOUT for 'R CMD check' on nebbiolo2. See the details here: > > https://secure-web.cisco.com/1-8TybfL8pH4eE6uQjbfLfexRLkAMn8Lnvpo3NxdGvCWLqenTiB7zlZbP0qhJm3Jtct5GMmucq20-2OknS-qPnkCQdq1jy4JSoY5IoM0ps5QXqSXDZnNxLnF9stbGW1AmYHDz7400Lf26cfqJxxRUQdU7IBYMQnlVI-O1-Z64DYMa3Ccncj4CU-tVUu52pQKOymu162qpmiwWdEO9tE3e4GgQGnAgK6SPKpBFzFhqtBXI_h2CL0sK2ybPSbfG6nXKmGyebPCMrdee7wWIoVj3zZ1ZyKeZckZrCd4eAtaPenjipgrKFPZ9itYcRbZ9HIqQ/https%3A%2F%2Fbioconductor.org%2FcheckResults%2F3.20%2Fbioc-LATEST%2FsegmentSeq%2Fnebbiolo2-checksrc.html > > Please take the time to address this by committing and pushing > changes to your package at git.bioconductor.org > > Notes: > > * This was the status of your package at the time this email was sent to > you. > Given that the online report is updated daily (in normal conditions) you > could see something different when you visit the URL(s) above, > especially if > you do so several days after you received this email. > > * It is possible that the problems reported in this report are false > positives, > either because another package (from CRAN or Bioconductor) breaks your > package (if yours depends on it) or because of a Build System problem. > If this is the case, then you can ignore this email. > > * Please check the report again 24h after you've committed your changes to > the > package and make sure that all the problems have gone. > > * If you have questions about this report or need help with the > maintenance of your package, please use the Bioc-devel mailing list: > > > https://secure-web.cisco.com/1Dn17O5UgGSJuM0UJ2nq4IJltkNktKB0rNxEbjJCwarmsCSeBO4gKsSMLgX0iL9gsbxoAJ02cGfglkQa0xPrpOPmlg5eIccO4fzM0uuTu778Cjnj3KEdZLCAKih-Zp77Q0IyBs0puI8KedanOGK5uHUl6NZH6BbKdOX87tDmQb_SH2vYexEmUfRULdJ5pMaeQB1mnyHc1tTdEeqvN8j4IZDphhD2QA1Ev0eK4mvern1E3LyC6zNsSPTzZ5ltkSFmzq8cij2ZwOsDGnf48yFo3IdHo3C208x7IuX9EdHNrZRUYMUXzk40ri9zcMVaj2s9P/https%3A%2F%2Fbioconductor.org%2Fhelp%2Fmailing-list%2F > > (all package maintainers are requested to subscribe to this list) > > For immediate notification of package build status, please > subscribe to your package's RSS feed. Information is at: > > https://secure-web.cisco.com/1YNLr4sUqYVvQwBR3skZEqG__qVrNUhw7uKtDIMYbyCsm5sqDriIEvqXTQ2QkFA7D-MiPIujZWg-OMZhwzr93KG2P-7_d3hovSCt8tIUH9cGS4HpQPNYzfrtcwu6D7jrYCnjDGdiikwBfUjQy4aliQhXjw88JcdHxlOLacgg46r5Sg1wtd-zyyzi9p0UinvBtu4X6uEUnfVVOh-gJaQNjK27LOS0xBFAF_R5Mb1ConlOnDkd7oVInlRoyitrll7PK0wnjajqR5oTZdK1y6QMhMmRB1DBDNrKG7LCY2vaLzniNnNsuuR4dpXHLYsyfYD6y/https%3A%2F%2Fbioconductor.org%2Fdevelopers%2Frss-feeds%2F > > Thanks for contributing to the Bioconductor project! > _______________________________________________ Bioc-devel@r-project.org mailing list https://secure-web.cisco.com/1D5rzgxkauj6ReanHH_mdc01eE9T39feaILEN0KvQps77WUEaBaA9q403Ize7WjH-njLCaQCfocByVePPHqgfIChsOckrCK4T-FJmFCrfvL09IiYZ0RzIPYRjnoGn53-M3yYyeMgh1bGRWrhJT6SuzP2VRp5vl_uR5OSCwmDuvWFO2qleuBUqnMQ1565QK3buWsjyKKXIJerdTJOtT-5ZpUTDDQzBp4SaE_VaOM-2AgqTqeS-_tAYNgNECxJ5vDfq2WIxgiBJpjNWHxDSXfGgupryXfWX2fQdX55FjhNvTR93Dut8-CwCLs_6d9jupekG/https%3A%2F%2Fstat.ethz.ch%2Fmailman%2Flistinfo%2Fbioc-devel This email message may contain legally privileged and/or confidential information. If you are not the intended recipient(s), or the employee or agent responsible for the delivery of this message to the intended recipient(s), you are hereby notified that any disclosure, copying, distribution, or use of this email message is prohibited. If you have received this message in error, please notify the sender immediately by e-mail and delete this email message from your computer. Thank you. [[alternative HTML version deleted]]
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