Hi,
I keep getting this message from Bioconductor for groHMM package and don't know
what the error is since I haven't changed anything in the package. Can someone
please help?
Regards,
Tulip.
"Warning in makeConsensusAnnotations(kgChr7, keytype = "gene_id", mc.cores =
getOption("mc.cores")) :
562 ranges do not have gene_id and they are
dropped
Reduce isoforms(701) ... OK
Truncate overlapped ranges ... OK
'select()' returned 1:1 mapping between keys and columns
Calculate overlapping ... OK
Scale overlapping ... OK
Warning: file stem
�/home/biocbuild/bbs-3.20-bioc/tmpdir/RtmpkfITSx/Rbuild130dca6dd2fd85/groHMM/vignettes/groHMM-fig2�
is not portable
Calculate overlapping ... OK
Scale overlapping ... OK
Loading required package: limma
Attaching package: �limma�
The following object is masked from �package:BiocGenerics�:
plotMA
Error: processing vignette 'groHMM.Rnw' failed with diagnostics:
chunk 21 (label = DE for trascripts)
Error in decideTestsDGE(et, p = 0.001, adjust = "fdr") :
could not find function "decideTestsDGE"
--- failed re-building �groHMM.Rnw�
SUMMARY: processing the following file failed:
�groHMM.Rnw�
Error: Vignette re-building failed.
Execution halted"
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