Hi Tulip, Are you sure? It looks like `edgeR` has deprecated / defunct that function. See this commit:
https://code.bioconductor.org/browse/edgeR/commit/bdd73bc0c6a0a710838f77ad419bdc2cf21ed357 Best regards, Marcel On 10/24/24 5:56 PM, Tulip Nandu wrote: > * This email originates from a sender outside of CUNY. Verify the sender > before replying or clicking on links and attachments. * > > Hi, > > Can someone guide me why this error came up. When there is no change to the > package made. > > Regards, > Tulip. > > > ________________________________ > From: Lee Kraus<lee.kr...@utsouthwestern.edu> > Sent: Thursday, October 24, 2024 1:16 PM > To: Tulip Nandu<tulip.na...@utsouthwestern.edu> > Subject: FW: groHMM problems reported in the Multiple platform build/check > report for BioC 3.20 > > > > > > > From:bbs-nore...@bioconductor.org <bbs-nore...@bioconductor.org> > Date: Thursday, October 24, 2024 at 11:00 AM > To: Lee Kraus<lee.kr...@utsouthwestern.edu> > Subject: groHMM problems reported in the Multiple platform build/check report > for BioC 3.20 > > EXTERNAL MAIL > > [This is an automatically generated email. Please don't reply.] > > Hi groHMM maintainer, > > According to the Multiple platform build/check report for BioC 3.20, > the groHMM package has the following problem(s): > > o ERROR for 'R CMD build' on nebbiolo2. See the details here: > > https://urldefense.com/v3/__https://bioconductor.org/checkResults/3.20/bioc-LATEST/groHMM/nebbiolo2-buildsrc.html__;!!MznTZTSvDXGV0Co!B3JaGl8USfJiPoEt4dV8iNDuJSinsunPZ74W0z4ErkhHUECAlubisgSf0oTKNALBakNL-xdRGnroijm-Ixdwy4zuJFwmCdE8Bb8$<https://urldefense.com/v3/__https:/bioconductor.org/checkResults/3.20/bioc-LATEST/groHMM/nebbiolo2-buildsrc.html__;!!MznTZTSvDXGV0Co!B3JaGl8USfJiPoEt4dV8iNDuJSinsunPZ74W0z4ErkhHUECAlubisgSf0oTKNALBakNL-xdRGnroijm-Ixdwy4zuJFwmCdE8Bb8$> > > Please take the time to address this by committing and pushing > changes to your package at git.bioconductor.org > > Notes: > > * This was the status of your package at the time this email was sent to > you. > Given that the online report is updated daily (in normal conditions) you > could see something different when you visit the URL(s) above, > especially if > you do so several days after you received this email. > > * It is possible that the problems reported in this report are false > positives, > either because another package (from CRAN or Bioconductor) breaks your > package (if yours depends on it) or because of a Build System problem. > If this is the case, then you can ignore this email. > > * Please check the report again 24h after you've committed your changes to > the > package and make sure that all the problems have gone. > > * If you have questions about this report or need help with the > maintenance of your package, please use the Bioc-devel mailing list: > > > https://urldefense.com/v3/__https://bioconductor.org/help/mailing-list/__;!!MznTZTSvDXGV0Co!B3JaGl8USfJiPoEt4dV8iNDuJSinsunPZ74W0z4ErkhHUECAlubisgSf0oTKNALBakNL-xdRGnroijm-Ixdwy4zuJFwm_YhbnkI$<https://urldefense.com/v3/__https:/bioconductor.org/help/mailing-list/__;!!MznTZTSvDXGV0Co!B3JaGl8USfJiPoEt4dV8iNDuJSinsunPZ74W0z4ErkhHUECAlubisgSf0oTKNALBakNL-xdRGnroijm-Ixdwy4zuJFwm_YhbnkI$> > > (all package maintainers are requested to subscribe to this list) > > For immediate notification of package build status, please > subscribe to your package's RSS feed. Information is at: > > https://urldefense.com/v3/__https://bioconductor.org/developers/rss-feeds/__;!!MznTZTSvDXGV0Co!B3JaGl8USfJiPoEt4dV8iNDuJSinsunPZ74W0z4ErkhHUECAlubisgSf0oTKNALBakNL-xdRGnroijm-Ixdwy4zuJFwm1w7zkco$<https://urldefense.com/v3/__https:/bioconductor.org/developers/rss-feeds/__;!!MznTZTSvDXGV0Co!B3JaGl8USfJiPoEt4dV8iNDuJSinsunPZ74W0z4ErkhHUECAlubisgSf0oTKNALBakNL-xdRGnroijm-Ixdwy4zuJFwm1w7zkco$> > > Thanks for contributing to the Bioconductor project! > > CAUTION: This email originated from outside UTSW. Please be cautious of links > or attachments, and validate the sender's email address before replying. > > ________________________________ > > UT Southwestern > > Medical Center > > The future of medicine, today. > > [[alternative HTML version deleted]] > > _______________________________________________ > Bioc-devel@r-project.org mailing list > https://urldefense.com/v3/__https://stat.ethz.ch/mailman/listinfo/bioc-devel__;!!LRXxDv2l!R4NeJ1qRszIMO8RR_5VMXfX04BF1fRFvsIo1nE3_6O9uWY92ZiLUQ8C37dDbO6OfVAQ70UsOV44bYfZaJKP2gsQ6fQUQAzd3tmymiA$ [[alternative HTML version deleted]] _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
