Thank you for letting us know. We will investigate the issue.
Lori Shepherd - Kern
Bioconductor Core Team
Roswell Park Comprehensive Cancer Center
Department of Biostatistics & Bioinformatics
Elm & Carlton Streets
Buffalo, New York 14263
________________________________
From: Bioc-devel <bioc-devel-boun...@r-project.org> on behalf of Alex Wong
<alexchwong.git...@gmail.com>
Sent: Saturday, October 12, 2024 7:49 PM
To: bioc-devel@r-project.org <bioc-devel@r-project.org>
Subject: [Bioc-devel] OrgDB entry for Homo sapiens and Mus musculus missing in
AnnotationHub
Hi there,
It seems that OrgDB entries for human and mouse have recently been removed
from AnnotationHub for Bioc 3.19, then re-entered into Bioc devel. This
database change breaks (my package) SpliceWiz for Bioc 3.19 but continues
to work for Bioc devel.
Reprex: the following returns `TRUE` for Bioc devel but `FALSE` in Bioc
3.19:
'''
library(AnnotationHub)
ah <- AnnotationHub()
ah_orgList <- subset(ah, ah$rdataclass == "OrgDb")
supportedSpecies <- unique(ah_orgList$species)
any(supportedSpecies == "Homo sapiens")
'''
Kind Regards,
Alex Wong
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