My package ChemmineOB is failing to build on Windows and mac arm64
(kjohnson1). They both show the same error, that a header file is
missing from the OpenBabel installation.
clang++ -arch arm64 -std=gnu++17
-I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG
-I/usr/include/openbabel3 -I/usr/include/eigen3 -DUSE_BOOST -DHAVE_EIGEN
-I/usr/local/include/eigen3 -I/usr/local/include/openbabel3
-I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/BH/include'
-I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/Rcpp/include'
-I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/zlibbioc/include'
-I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c
ChemmineOB.cpp -o ChemmineOB.o
ChemmineOB.cpp:1569:10: fatal error: 'openbabel/obutil.h' file not found
#include <openbabel/obutil.h>
^~~~~~~~~~~~~~~~~~~~
1 error generated.
Here is the build report:
https://www.bioconductor.org/checkResults/3.19/bioc-LATEST/ChemmineOB/palomino7-install.html
It is saying that the file openbabel/obutil.h is missing. That file
appears normally when I install OpenBabel myself, so could you check
that OpenBabel is installed on those machines and confirm whether or not
that file is present? Could you also let me know what directory
openbabel is installed in? Thank you.
Kevin
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