Dear Michael, The error means that length(which(cond)) > 1 I think this is a bug on BiocCheck on the internal function .getTokenTextCode (findSymbols.R L12 <https://github.com/Bioconductor/BiocCheck/blob/222e4693a947673ef16d9e6982e7f1c14e2c705f/R/findSymbols.R#L12> ). It checks if any condition is met not if it is met only once.
I hope this helps, Best, On Fri, 26 Jul 2024 at 11:29, Michael Shapiro <michael.shap...@crick.ac.uk> wrote: > We are currently working through the submission of a new package, > CatsCradle (issue #3452). We get a build error from the Coding Practices > section of the BiocCheck tests, namely > > > Error in seq.default(which(cond) - length(notLookback), which(cond)) : > 'from' must be of length 1 > > For whatever reason, we do not get this error when running BiocCheck > locally. > > We have consulted > > https://bioconductor.org/packages/devel/bioc/vignettes/BiocCheck/inst/doc/BiocCheck.html#coding-practices-checks > and the closest we can find is the recommendation to use seq_len(N) in > place of things like 1:N. We are now consistently using seq_len for > sequences that begin with 1 and seq(from=a,to=b) for sequences beginning at > other values but this has not resolved the error. > > Any assistance with this would be very much appreciated. > > The Francis Crick Institute Limited is a registered charity in England and > Wales no. 1140062 and a company registered in England and Wales no. > 06885462, with its registered office at 1 Midland Road London NW1 1AT > > [[alternative HTML version deleted]] > > _______________________________________________ > Bioc-devel@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/bioc-devel > [[alternative HTML version deleted]] _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
