Sorry to hear you are having problems. I tried to run the igblast example in a current installation. I set
BASILISK_MINICONDA_VERSION=py311_23.11.0-2 to get faster mamba resolution (but this setting cannot be used on windows AFAIK, so is not used in build system) and I hit warning libmamba Problem type not implemented SOLVER_RULE_STRICT_REPO_PRIORITY failed LibMambaUnsatisfiableError: Encountered problems while solving: - package dnaio-1.2.1-py310h7c593f9_0 requires xopen >=1.4.0, but none of the providers can be installed Could not solve for environment specs The following package could not be installed └─ dnaio 1.2.1** is not installable because it requires └─ xopen >=1.4.0 , which conflicts with any installable versions previously reported. Now I don't claim this to be representative of the build system but it does illustrate an issue you will have to deal with. It is valuable to use the python session-info (pypi) to determine the active versions of all dependencies after a successful run of igblast in your package. Then pin them all in your basilisk.R As for abandoning the windows platform, it can be done but you lose access to a large potential user base. On Mon, Jul 8, 2024 at 4:14 AM Rodrigo Arcoverde Cerveira < rodrigo.arcove...@gmail.com> wrote: > Hi all, > > We are trying to implement a new tool in scifer package, and I have a few > questions about compatibility and build reports. > > 1. I am getting the following error in build for Linux (openEuler 22.03 > LTS-SP1) / aarch64. > > ``` > > error: dependency ‘sangerseqR’ is not available for package ‘scifer’ > > ``` > > However, when I check the devel build report for sangerseqR it seems to be > passing without errors and only its dependent packages are getting this > error. > > 1. Besides that, we are having the same error in Windows and macOS > 13.6.5 Ventura. This new function we are trying to implement relies on a > conda environment (basilisk). The issue is that the packages we need in > conda are not available for all the platforms so I get an error that the > packages we need are not found. > > ``` > > PackagesNotFoundError: The following packages are not available from > current channels: > > > > - dnaio=1.2.1 > > - igblast=1.22.0 > > ``` > > 1. Finally, is it mandatory to be compatible with windows? > > Hope someone can help 😃 > > Best regards, > Rodrigo > > [[alternative HTML version deleted]] > > _______________________________________________ > Bioc-devel@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/bioc-devel > -- The information in this email is intended only for the p...{{dropped:15}} _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
