Hi, Yesterday there was another email about Biostrings - https://stat.ethz.ch/pipermail/bioc-devel/2024-April/020395.html I thought it might be related to your problem.
Regards, Martin On Thu, Apr 25, 2024 at 8:23 AM Ulrich Bodenhofer < ulrich.bodenho...@gmail.com> wrote: > Dear colleagues, dear BioC core team, > > One of my packages in the devel branch, the ‘msa’ package seems broken > since > yesterday. The vignette does not run anymore (therefore, the package does > not build), and the reason is that the BLOSUM62 substitution matrix cannot > be loaded form the ‘Biostrings’ package anymore. I checked the ‘Biostrings’ > package. In Version 2.70.3 in the release branch, the substitution matrices > were still in the ‘data/’ directory. In the current devel version 2.71.6, > they have disappeared. I found no hint to that in the NEWS file. So, I want > to kindly ask the maintainers of the ‘Biostrings’ package to give me some > advice how to fix that on my side or, in case that this is an error in the > current devel version of the ‘Biostrings’ package, to have a look into > this. > > Thanks a lot in advance, best regards, > Ulrich > > _______________________________________________ > Bioc-devel@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/bioc-devel > [[alternative HTML version deleted]] _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
