Thanks again Steffen and Mike for sharing, recently I found some free time and ended up implementing your suggestions as a GitHub Action. Maybe this could be of interest to you https://github.com/Genentech/midasHLA/issues/27#issuecomment-1855795946
Cheers Maciek On Thu, 16 Nov 2023 at 11:08, Mike Smith <grimbo...@gmail.com> wrote: > Personally I do as Steffen mentioned, and grab the upstream changes > manually. Changes not introduced by me only happen once every 6 months, > and I'm involved enough with Bioconductor that I generally know when the > release and version bump has occurred, so it's never quite felt like enough > work to implement an automatic workflow. I think I'm just as likely to > forget to put the changes from GitHub to my local machine, and still end up > with a merge conflict at some point. > > However, I think you should be able to use this action from the > marketplace to achieve the automatic syncing without too much work creating > the workflow: > > https://github.com/marketplace/actions/upstream-sync > > Cheers, > Mike > > On Wed, 15 Nov 2023 at 12:22, migdal migdal <mcjmig...@gmail.com> wrote: > >> Awesome, thanks for the response! >> >> I think it should be possible to put what you are doing manually into >> GithubActions script, but I am not sure how to do that. >> >> On Wed, Nov 15, 2023, 12:12 Neumann, Steffen <sneum...@ipb-halle.de> >> wrote: >> >> > Hi, >> > >> > so far I am doing this manually, I have my github as remote origin, >> > and the bioc git as upstream, and indeed after the releases I pull from >> > upstream the changed version number and push it to my origin on github. >> > >> > Yours, >> > Steffen >> > >> > On Sat, 2023-11-11 at 09:35 +0100, migdal migdal wrote: >> > > Hi guys, >> > > >> > > recently I have realized that the version number in one of my >> > > packages does >> > > not match with the version in the bioconductor repository ( >> > > https://github.com/Genentech/midasHLA/issues/27 >> > > ). The reason is that, while >> > > I have been doing no changes past the last few releases a version >> > > bump was >> > > happening on each Bioconductor RELEASE. >> > > >> > > Does anyone use some automated way to synchronise between the >> > > repositories? >> > > GitHub Actions would be an ideal solution. >> > > >> > > Cheers Maciek >> > > >> > > [[alternative HTML version deleted]] >> > > >> > > _______________________________________________ >> > > Bioc-devel@r-project.org mailing list >> > > https://stat.ethz.ch/mailman/listinfo/bioc-devel >> > >> > -- >> > Upcoming events: >> > >> > * 2nd ELIXIR-DE Hackathon, 11-15 December 2023 in Bielefeld >> > https://www.denbi.de/de-nbi-events/1547-biohackathon-germany-2 >> > >> > >> > --- >> > IPB Halle Computational Plant Biochemistry (CPB) >> > Dr. Steffen Neumann http://www.ipb-halle.de/ >> > Weinberg 3 Tel. +49 (0) 345 5582 - 1470 >> > 06120 Halle +49 (0) 345 5582 - 0 >> > sneumann(at)IPB-Halle.DE Fax. +49 (0) 345 5582 - 1409 >> > >> > >> > >> > >> > >> > >> > >> > >> > >> > >> > >> > >> > >> > >> > >> > >> > >> > >> > >> > >> > >> > >> > >> >> [[alternative HTML version deleted]] >> >> _______________________________________________ >> Bioc-devel@r-project.org mailing list >> https://stat.ethz.ch/mailman/listinfo/bioc-devel >> > [[alternative HTML version deleted]] _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
