Hi Alex,
On 11/28/23 22:47, Alex Wong via Bioc-devel wrote:
> Hi there,
>
> I am the author of SpliceWiz. My package contains several wrapper functions
> that run the STAR aligner on systems where it is installed. If STAR is not
> found, these functions do nothing other than return a helpful message that
> says STAR is not available. The vast majority of the functions in the
> package does not depend on STAR, thus STAR is a highly optional requirement
> for my package.
>
> What is the best way to convey this in the DESCRIPTION file? Is it
> acceptable to add the following line?
>
>> SystemRequirements: STAR (optional)
That works but it's hard to know what functionality is lost by not
having STAR on the machine.
Would it make sense to put all the STAR-related stuff in their own
package and have SpliceWiz suggest that package?
STAR would now be a hard requirement for the package that contains the
STAR-related stuff.
This kind of separation might help with maintenance and quality control.
It might also help making things less confusing for the end user.
Best,
H.
> Kind Regards,
>
> Alex
>
--
Hervé Pagès
Bioconductor Core Team
hpages.on.git...@gmail.com
[[alternative HTML version deleted]]
_______________________________________________
Bioc-devel@r-project.org mailing list
https://stat.ethz.ch/mailman/listinfo/bioc-devel
