Thank you Jennifer! I just made that change on both release and devel. https://github.com/LieberInstitute/spatialLIBD/commit/94048657dd0cf134b8e2347933e4302f75cec415
Best, Leo Leonardo Collado Torres, Ph. D. Investigator, LIEBER INSTITUTE for BRAIN DEVELOPMENT Assistant Professor, Department of Biostatistics Johns Hopkins Bloomberg School of Public Health 855 N. Wolfe St., Room 385 Baltimore, MD 21205 lcolladotor.github.io lcollado...@gmail.com On Wed, Nov 29, 2023 at 12:17 PM Jennifer Wokaty <jennifer.wok...@sph.cuny.edu> wrote: > > Hi Leo, > > spatialLIBD is missing DropletUtils in Suggests in the DESCRIPTION. If you > add it there and bump the version, it will pass check. > > Jennifer Wokaty (they/them) > > Waldron Lab at CUNY SPH > Bioconductor Core Team > ________________________________ > From: Bioc-devel <bioc-devel-boun...@r-project.org> on behalf of Leonardo > Collado Torres <lcollado...@gmail.com> > Sent: Wednesday, November 29, 2023 9:11 AM > To: Bioc-devel <bioc-devel@r-project.org> > Subject: [Bioc-devel] Availability of DropletUtils on BBS for an experiment > package > > * This email originates from a sender outside of CUNY. Verify the sender > before replying or clicking on links and attachments. * > > Hi BioC-devel, > > Do you know why DropletUtils is not available on bioc 3.18 for the > BBS? I keep seeing errors about it at > https://nam02.safelinks.protection.outlook.com/?url=https%3A%2F%2Furldefense.com%2Fv3%2F__https%3A%2F%2Fmaster.bioconductor.org%2FcheckResults%2F3.18%2Fdata-experiment-LATEST%2FspatialLIBD%2Fnebbiolo2-checksrc.html__%3B!!PxiZbSOawA!MFQ9mQCSL0x9pjrtdNr8LWIDL0WyBTRjA94qKNvwpWf6HssqHzvkEzT004js2ZQHI93BSdxwPqalkF4csGWCa7fEqcixawg%24&data=05%7C01%7Cjennifer.wokaty%40sph.cuny.edu%7C006d56be16e4471e318e08dbf0e545b7%7C6f60f0b35f064e099715989dba8cc7d8%7C0%7C0%7C638368639765624428%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C3000%7C%7C%7C&sdata=G3JE%2FgBKp137DCvhmhcREQb%2F4sG%2BBd0cZkjlJm1P034%3D&reserved=0 > (which is an Experiment package, not a Software one) > > Quitting from lines 178-193 [import_to_r] (TenX_data_download.Rmd) > Error: processing vignette 'TenX_data_download.Rmd' failed with diagnostics: > there is no package called 'DropletUtils' > --- failed re-building ‘TenX_data_download.Rmd’ > > At > https://nam02.safelinks.protection.outlook.com/?url=https%3A%2F%2Furldefense.com%2Fv3%2F__https%3A%2F%2Fbioconductor.org%2Fpackages%2Frelease%2Fbioc%2Fhtml%2FDropletUtils.html__%3B!!PxiZbSOawA!MFQ9mQCSL0x9pjrtdNr8LWIDL0WyBTRjA94qKNvwpWf6HssqHzvkEzT004js2ZQHI93BSdxwPqalkF4csGWCa7fE7mWBMjo%24&data=05%7C01%7Cjennifer.wokaty%40sph.cuny.edu%7C006d56be16e4471e318e08dbf0e545b7%7C6f60f0b35f064e099715989dba8cc7d8%7C0%7C0%7C638368639765635135%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C3000%7C%7C%7C&sdata=w2%2BOmrICIKKycrQtbt56gSs0mt9Bc536baQbFhY8nts%3D&reserved=0 > , > I do see that all binaries and the source package are available. > > Thanks, > Leo > > > Leonardo Collado Torres, Ph. D. > Investigator, LIEBER INSTITUTE for BRAIN DEVELOPMENT > Assistant Professor, Department of Biostatistics > Johns Hopkins Bloomberg School of Public Health > 855 N. Wolfe St., Room 385 > Baltimore, MD 21205 > lcolladotor.github.io > lcollado...@gmail.com > > _______________________________________________ > Bioc-devel@r-project.org mailing list > https://nam02.safelinks.protection.outlook.com/?url=https%3A%2F%2Furldefense.com%2Fv3%2F__https%3A%2F%2Fstat.ethz.ch%2Fmailman%2Flistinfo%2Fbioc-devel__%3B!!PxiZbSOawA!MFQ9mQCSL0x9pjrtdNr8LWIDL0WyBTRjA94qKNvwpWf6HssqHzvkEzT004js2ZQHI93BSdxwPqalkF4csGWCa7fEoKb0iBw%24&data=05%7C01%7Cjennifer.wokaty%40sph.cuny.edu%7C006d56be16e4471e318e08dbf0e545b7%7C6f60f0b35f064e099715989dba8cc7d8%7C0%7C0%7C638368639765640048%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C3000%7C%7C%7C&sdata=2HWrzvP60fFjOcb18vywyDZDaghU9rx1K%2FshsCVYrA8%3D&reserved=0 _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
