Hi Lara, Today, I tried R CMD build on your package on our Linux release builder and got the following:
~/bbs-3.17-bioc/R/bin/R CMD build rfaRm * checking for file ‘rfaRm/DESCRIPTION’ ... OK * preparing ‘rfaRm’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘rfaRm.Rmd’ using rmarkdown Quitting from lines 74-83 [unnamed-chunk-3] (rfaRm.Rmd) Error: processing vignette 'rfaRm.Rmd' failed with diagnostics: Timeout was reached: [rfam.org] SSL connection timeout --- failed re-building ‘rfaRm.Rmd’ SUMMARY: processing the following file failed: ‘rfaRm.Rmd’ Error: Vignette re-building failed. Execution halted However, I see that it actually passed the build today on that same machine but failed on R CMD check, so it's possible that that the problem is intermittent due to connection issues. Jennifer Wokaty (they/them) Waldron Lab at CUNY SPH Bioconductor Core Team ________________________________ From: Bioc-devel <bioc-devel-boun...@r-project.org> on behalf of Selles Vidal, Lara <lara.selle...@imperial.ac.uk> Sent: Monday, June 19, 2023 9:37 PM To: bioc-devel@r-project.org <bioc-devel@r-project.org> Subject: [Bioc-devel] rfaRm package * This email originates from a sender outside of CUNY. Verify the sender before replying or clicking on links and attachments. * Dear all, My rfaRm package has been giving TIMEOUT in the build results on all plaforms recently. I have been tried to debug the issue, but I am unable to reproduce the problem locally. The build report only seems to indicate that it times out while building vignettes (https://urldefense.proofpoint.com/v2/url?u=http-3A__bioconductor.org_checkResults_release_bioc-2DLATEST_rfaRm_merida1-2Dbuildsrc.html&d=DwIFAg&c=mRWFL96tuqj9V0Jjj4h40ddo0XsmttALwKjAEOCyUjY&r=FKSqKXkUOES-D4VQb2jSn9QK7Vz5lE18rLcyn73CPhA&m=qTwdJxyJM_TNb3T9s_tfKmSX0e7aNvkVIBXATnsYJRaFl9_9IE9R7tqCSRJcDRJH&s=VhKun5uNWjqnt5WsUNKIC1Z6vYVC3LnChzZWpGFvQfg&e= ). Would there be any way to specifically find out at which point of building the vignette the timing out is taking place? Thanks a lot in advance! Best wishes, Lara _______________________________________________ Bioc-devel@r-project.org mailing list https://urldefense.proofpoint.com/v2/url?u=https-3A__stat.ethz.ch_mailman_listinfo_bioc-2Ddevel&d=DwIFAg&c=mRWFL96tuqj9V0Jjj4h40ddo0XsmttALwKjAEOCyUjY&r=FKSqKXkUOES-D4VQb2jSn9QK7Vz5lE18rLcyn73CPhA&m=qTwdJxyJM_TNb3T9s_tfKmSX0e7aNvkVIBXATnsYJRaFl9_9IE9R7tqCSRJcDRJH&s=KEVTPqjo3zFZDhjjgKDTI9MkdA4cXZZdcbDxUojcQ_k&e= [[alternative HTML version deleted]] _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
