Yes, that's a very good suggestion indeed, but doesn't look it is the reason
- the .gitignore files contains vignettes/figure, without the s, although I wouldn't know for sure if this would impact the directory (I'll remove it, just it case) - the figures directory exists on github [1] - I cloned the repo from git.bioconductor.org and it's also present there (with all the figures) Thank you anyway! [1] https://github.com/lgatto/RforProteomics/tree/master/vignettes/figures ________________________________________ From: Oleksii Nikolaienko <oleksii.nikolaie...@gmail.com> Sent: 28 April 2023 16:53 To: Laurent Gatto Cc: bioc-devel@r-project.org Subject: Re: [Bioc-devel] RforProteomics: vignette error - cannot find the file(s) Hi, I wonder if it's because the entire "vignettes/figures" is not pushed to Bioc git (it's included in your .gitignore). And the previous chunk does not re-create the figure. Best, Oleksii On Fri, 28 Apr 2023 at 15:24, Laurent Gatto <laurent.ga...@uclouvain.be<mailto:laurent.ga...@uclouvain.be>> wrote: I am puzzled by this error: The vignette fails because it can't find a figure * checking re-building of vignette outputs ... ERROR Error(s) in re-building vignettes: --- re-building ‘RProtVis.Rmd’ using rmarkdown Quitting from lines 607-608 (RProtVis.Rmd) Error: processing vignette 'RProtVis.Rmd' failed with diagnostics: Cannot find the file(s): "figures/msanim1.gif" --- failed re-building ‘RProtVis.Rmd’ Even though that figure does exists [1]. I am unable to reproduce locally and on Github [2] Source: [3] Any idea? Laurent [1] https://github.com/lgatto/RforProteomics/tree/master/vignettes/figures [2] If fails at the moment, but for a different reason - a dependency is not (yet?) available [3] https://master.bioconductor.org/checkResults/3.17/data-experiment-LATEST/RforProteomics/nebbiolo1-checksrc.html _______________________________________________ Bioc-devel@r-project.org<mailto:Bioc-devel@r-project.org> mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
