Hi, I've introduced some C code, modified from FMStable on CRAN, to the intended Bioc 3.17 release of extraChIPs. When I build using github actions it works for all three platforms ( https://github.com/smped/extraChIPs/actions/runs/4669758037), but fails on palamino3 and merida1. The build report is here: https://bioconductor.org/checkResults/devel/bioc-LATEST/extraChIPs/. It's really not my C code so I'm flying a little blind as I'm very much a baby in the world of C. I actually wish I could just import the compiled version directly from FMStable but can't figure out how, even after hours of googling & trying everything within in my capacity. The speedup using this is >100-fold so it brings function execution time from minutes to seconds.
As I'm trying to figure this out, one thought I had was that an early push erroneously contained the .o and .so files. I've since deleted these from the repository. Are they resident on those servers still and is that causing the problems? If so, how can I fix this? If not, does anyone have any suggestions? The actual functions which call the routines are at the bottom of https://github.com/smped/extraChIPs/blob/devel/R/mergeByHMP.R Thanks in advance, Stevie [[alternative HTML version deleted]] _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
