Thank you for the detailed messages. We updated the hooks for packages last week and it appears I introduced a bug. I will look into this immediately and hopefully should have it resolved shortly. Sorry for the inconvenience this has caused.
Lori Shepherd - Kern Bioconductor Core Team Roswell Park Comprehensive Cancer Center Department of Biostatistics & Bioinformatics Elm & Carlton Streets Buffalo, New York 14263 ________________________________ From: Bioc-devel <bioc-devel-boun...@r-project.org> on behalf of Ulrich Bodenhofer <bodenho...@bioinf.jku.at> Sent: Monday, February 20, 2023 10:22 AM To: bioc-devel@r-project.org <bioc-devel@r-project.org> Subject: [Bioc-devel] Cannot push to BioC git repo Hi, I am the maintainer of the 'msa' package which has been in Bioconductor for eight years now. The package is hosted on github and synchronized with the BioC git repo. Today I merged a pull request that had been contributed by a github user. I further updated the package's DESCRIPTION and inst/NEWS file and wanted to push the latest version to the BioC git repo. No matter what I did, I did not succeed. The error messages are attached below. I am not a very skilled git user. Does anybody have an idea what I could/should do? Any help is gratefully appreciated! Thanks, Ulrich -- Enumerating objects: 22, done. Counting objects: 100% (22/22), done. Delta compression using up to 8 threads Compressing objects: 100% (13/13), done. Writing objects: 100% (13/13), 19.57 KiB | 1.96 MiB/s, done. Total 13 (delta 9), reused 0 (delta 0), pack-reused 0 remote: Traceback (most recent call last): remote: File "hooks/pre-receive.h00-pre-receive-hook-software", line 93, in <module> remote: apply_hooks(hooks_dict) remote: File "hooks/pre-receive.h00-pre-receive-hook-software", line 79, in apply_hooks remote: prevent_duplicate_commits(oldrev, newrev, refname) remote: File "/home/git/.gitolite/local/hooks/repo-specific/prevent_duplicate_commits.py", line 67, in prevent_duplicate_commits remote: rev2 = get_svn_revision(second) remote: File "/home/git/.gitolite/local/hooks/repo-specific/prevent_duplicate_commits.py", line 43, in get_svn_revision remote: revision = SVN_COMMIT_REGEX.match(body.decode()) remote: UnicodeDecodeError: 'utf-8' codec can't decode byte 0xa1 in position 25709: invalid start byte To git.bioconductor.org:packages/msa.git ! [remote rejected] master -> master (pre-receive hook declined) error: failed to push some refs to 'git.bioconductor.org:packages/msa.git' _______________________________________________ Bioc-devel@r-project.org mailing list https://secure-web.cisco.com/1wXGHRTWKbQEagxRJpaKB7jqsxWXG1NzHxzkZgPnrq_5py6nlq5yQCZn9-cMkotUtih8EsfiM67zkbavrKm9se99t7E9JdshzU4a-d6dNKMkZ43PRQUS76hdFuvC5mq12ZoOhj3KcuViKYCj00VJadgeCLFJDPbo7J7GuXf6lItzoTmQh5p7Dq1OGWIRk9ik5eh5m-Ggk3JUdmix7o0pEw9qVQ0zrPMEdVBvRW--SEKscKHImLq-VsF0atSiYLAk_RkcZuV5gI7t6AEkXynlz3AlQSI07JXRGjuA2RTaRoF5WGDfDO6urEivmYPL65m2D/https%3A%2F%2Fstat.ethz.ch%2Fmailman%2Flistinfo%2Fbioc-devel This email message may contain legally privileged and/or confidential information. If you are not the intended recipient(s), or the employee or agent responsible for the delivery of this message to the intended recipient(s), you are hereby notified that any disclosure, copying, distribution, or use of this email message is prohibited. If you have received this message in error, please notify the sender immediately by e-mail and delete this email message from your computer. Thank you. [[alternative HTML version deleted]] _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
