Hi Colleagues, I am currently a PhD student in Bioinformatics at the University of Toledo, College of Medicine and Life Sciences. I am working in the cognitive disorders research lab (https://cdrl-ut.org) and we have been actively developing multiple packages. We are particularly interested in building data and analysis packages for Kinase Activity analysis.
We have a number of packages that we would like to submit to Bioconductor for acceptance. I am currently in the process of streamlining the packages, making sure their dependencies are clearly defined and extracting large datasets into their own data packages. I had a couple of questions regarding the submissions: 1. At our lab we rely heavily on Github Actions for continuous integration and delivery. Are the actions outlined in the biocthis ( https://bioconductor.org/packages/release/bioc/html/biocthis.html) package up to date and something we can reliably build on? 2. We have quite a few packages and there may be some packages that would be better to go into the same release. Is it possible to submit them all separately but have their review process be streamlined, collectively? 3. Is Bioconductor's git infrastructure set up to update from our github repo or is there a solution we can build to push our new "release" to the bioconductor git infra after the integration tests in github actions are completed? Thank you. Regards, Dr. Ali Sajid Imami LinkedIn <https://pk.linkedin.com/pub/ali-sajid-imami/50/956/2a6> [[alternative HTML version deleted]] _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
