Hi Lori, The package rcellminerData did not bump to version 2.20.0. Is it related to the build warning? Please let me know what is the issue. And how to fix it?
Thanks, Fathi From: "Kern, Lori" <lori.sheph...@roswellpark.org> Date: Monday, April 18, 2022 at 9:16 AM To: "Elloumi, Fathi (NIH/NCI) [E]" <fathi.ello...@nih.gov> Cc: Hervé Pagès <hpa...@fredhutch.org>, bioc-devel <bioc-devel@r-project.org> Subject: [EXTERNAL] Re: Bioconductor package rcellminerData CAUTION: This email originated from outside of the organization. Do not click links or open attachments unless you recognize the sender and are confident the content is safe. Experiment Data packages are built every Tue and Thur. as shown on the build report header page http://bioconductor.org/checkResults/<https://gcc02.safelinks.protection.outlook.com/?url=http%3A%2F%2Fbioconductor.org%2FcheckResults%2F&data=04%7C01%7Cfathi.elloumi%40nih.gov%7C65e2553eb36a4943fe1608da213daaad%7C14b77578977342d58507251ca2dc2b06%7C0%7C0%7C637858845986991504%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C3000&sdata=qzbjdlIMCKF%2BPNjlkmyOddWtpRnzQdApp%2FQH7HJq4MY%3D&reserved=0> The changes pushed up last Thur 14 would have been too late to be included in a Thursday build report. I expect the changes to be visible after Tomorrow's build report posts. Cheers, Lori Shepherd - Kern Bioconductor Core Team Roswell Park Comprehensive Cancer Center Department of Biostatistics & Bioinformatics Elm & Carlton Streets Buffalo, New York 14263 ________________________________ From: Elloumi, Fathi (NIH/NCI) [E] <fathi.ello...@nih.gov> Sent: Monday, April 18, 2022 9:12 AM To: Kern, Lori <lori.sheph...@roswellpark.org> Cc: Hervé Pagès <hpa...@fredhutch.org>; bioc-devel <bioc-devel@r-project.org> Subject: Re: Bioconductor package rcellminerData Hello Lori, I bumped the rcellminerData dev version from 2.17.0 to 2.17.1 since 4/14 and I did see it on devel builders: http://bioconductor.org/checkResults/3.15/data-experiment-LATEST/rcellminerData/<https://gcc02.safelinks.protection.outlook.com/?url=http%3A%2F%2Fsecure-web.cisco.com%2F1s-iF2UYBJfYCAfGpCmXbWtJhQFybcrBDIVxYSViZrfDLNHBXH6DOqbL9SFxE3YpBywTkE5GNGS1al6M2DDdPQj1fhH8WpjDdMSge4G2HOwp0bJADAn2fSAvYL1NnzzXdu-AjPk3XlzGcFqB71OXS0JBBxr5OFPY30Go-8f4YKkKRsjo-26qrybURbKFPP0i6RvSExG0YYwi1uHja2cKzF_PcEGo7vEpGBjRLGufwLFyTjmpp-uo7Nt2odBO3OwbPB2PXgv6_p2uau4wSaYkuNGZ6BKgklD_47sgTO_h-oucpA1ln1adMzYXCbrE5OzFq%2Fhttp%253A%252F%252Fbioconductor.org%252FcheckResults%252F3.15%252Fdata-experiment-LATEST%252FrcellminerData%252F&data=04%7C01%7Cfathi.elloumi%40nih.gov%7C65e2553eb36a4943fe1608da213daaad%7C14b77578977342d58507251ca2dc2b06%7C0%7C0%7C637858845986991504%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C3000&sdata=f99SXrtHkGNLwTr0mycvZlRZelQS%2Fwvg1UaPeKx4FSg%3D&reserved=0> Could help me with this issue? Thanks, Fathi From: "Kern, Lori" <lori.sheph...@roswellpark.org> Date: Tuesday, June 29, 2021 at 10:50 AM To: "lu...@cbio.mskcc.org" <lu...@cbio.mskcc.org>, "Rajapakse, Vinodh (NIH/NCI) [C]" <vinodh.rajapa...@nih.gov>, "Elloumi, Fathi (NIH/NCI) [C]" <fathi.ello...@nih.gov> Subject: Bioconductor package rcellminerData Hello package maintainer, We would like to bring to your attention that your package is failing on the devel builders of Bioconductor: http://bioconductor.org/checkResults/3.14/data-experiment-LATEST/rcellminerData<https://gcc02.safelinks.protection.outlook.com/?url=http%3A%2F%2Fsecure-web.cisco.com%2F1wTHb4J5vYt79t1m8zlFtYsm9GvIk_ERR_mIiz8DJ7FKPtWOrlHAMPFSIg9IJNrdx4yDn72YFxwEA2JLKY-yrddpSDKVmIwZKNbMfxBnZBsZJv9jUiV2JzZ3KGALeIW4nOObhPYbxDjjaD1Ee8HymsDdkkQ88v5MwhPXJyf_QPTmsUxJNvj7j1OI7G8t0ZohewDr43q6cQ0aGQ7d_VQQeoRf_Km-v1cWRJBH0TQqxj0iRjn_LdKla1rB3zAvE_n9D-etgmJXwm7hZEomnbN40wUMGfwWg_5w7GXN1mzAicTaHOwVs5mqdd1iXkWPoXqxt%2Fhttp%253A%252F%252Fbioconductor.org%252FcheckResults%252F3.14%252Fdata-experiment-LATEST%252FrcellminerData&data=04%7C01%7Cfathi.elloumi%40nih.gov%7C65e2553eb36a4943fe1608da213daaad%7C14b77578977342d58507251ca2dc2b06%7C0%7C0%7C637858845986991504%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C3000&sdata=GFVis7Hpr8yjv%2FUN678SKAp%2Fc0cto6EWNluHMa8jSD0%3D&reserved=0> Please fix your package as soon as possible. If the package remains broken for an extended period of time, we will deprecate the package. The ERROR results from an update in the knitr package as announced here: https://stat.ethz.ch/pipermail/bioc-devel/2021-June/018223.htm<https://gcc02.safelinks.protection.outlook.com/?url=https%3A%2F%2Fsecure-web.cisco.com%2F1dwHEjF3CCkUF9mhzYvELi0IoERCWPTDzCNUl4bPe8QHKf5aWv9Qj7RinMoAinXfZQvzIbamMr9vgVmcKdKentGLNBYnF2icPuu6W6_BL5oPPpiMgeN75gzr7wVSN9HVhgO93pdFjVPQP0JuYPlQ2bB4Dik9A4Q20nYCBe4Bd4tDAQvTN1GbdpgPgLrBMRFNYqgqajL57mzfzHHN8dg-jexyKc1H3rYdb1_uRMdKdYWnvIEw-vql288A4M3FJnSNcLPgtSljKQUrif5aUsoGTLc2rUrxs19wMcq0jf79X5HrQe6d4TQatb84HbMxl2_az%2Fhttps%253A%252F%252Fstat.ethz.ch%252Fpipermail%252Fbioc-devel%252F2021-June%252F018223.htm&data=04%7C01%7Cfathi.elloumi%40nih.gov%7C65e2553eb36a4943fe1608da213daaad%7C14b77578977342d58507251ca2dc2b06%7C0%7C0%7C637858845986991504%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C3000&sdata=JIvqVRnx5%2FNZM%2FYMdArU0EnEsSN4sW37pZk9sO26hGs%3D&reserved=0> Lori Shepherd Bioconductor Core Team Roswell Park Comprehensive Cancer Center Department of Biostatistics & Bioinformatics Elm & Carlton Streets Buffalo, New York 14263 This email message may contain legally privileged and/or confidential information. 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