I forgot to reply all. Here is my initial response.
---------- Forwarded message ---------
From: Vincent Carey <st...@channing.harvard.edu>
Date: Wed, Jul 27, 2022 at 8:20 AM
Subject: Re: [Bioc-devel] Package fails to install
To: Alemu Takele <alemu...@hotmail.com>
On Wed, Jul 27, 2022 at 8:13 AM Alemu Takele <alemu...@hotmail.com> wrote:
> Hi the Bioconductor community,
>
> I have submitted and published a package called SPsimSeq on Bioconductor
> but I'm having an issue of installing it using the command
> `BiocManager::install("SPsimSeq"). Apparently, I'm not the only one with
> this issue. When I run the above command, the error message says
>
Thanks for your note. You are using Bioconductor 3.12, but the current
version is 3.15.
You can continue with 3.12 but you will have to acquire compatible versions
of all the
non-BioC dependencies like latticeExtra... you may need to find an earlier
version; see
https://support.rstudio.com/hc/en-us/articles/219949047-Installing-older-versions-of-packages
> > BiocManager::install("SPsimSeq")
> Bioconductor version 3.12 (BiocManager 1.30.10), R 4.0.3 (2020-10-10)
> Installing package(s) 'SPsimSeq'
> trying URL '
> https://bioconductor.org/packages/3.12/bioc/bin/windows/contrib/4.0/SPsimSeq_1.0.0.zip
> '
> Content type 'application/zip' length 911693 bytes (890 KB)
> downloaded 890 KB
>
> package ‘SPsimSeq’ successfully unpacked and MD5 sums checked
>
>
> Then
> > library(SPsimSeq)
> Error: package or namespace load failed for ‘SPsimSeq’ in loadNamespace(j
> <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]):
> there is no package called ‘latticeExtra’
> In addition: Warning message:
> In readRDS(f) : error reading the file
>
>
> The package 'latticeExtra' is not part of SPsimSeq dependencies and when I
> try to install I never succeed.
>
> Can you suggest to me the solution, please? Thanks in advance.
>
>
> Best regards,
>
> Alemu Takele, ASSEFA
> Tel: +32 486 76 84 55
> Skype: Alemu.tak
>
> [[alternative HTML version deleted]]
>
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>
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