Please also be mindful that if you have already committed changes before doing a
git pull upstream master to retrieve changes on git.bioconductor.org, you may encounter merge conflicts (esp regarding package version number) that may need to be resolved before a git push upstream master would be allowed. This generally involves resolving the merge conflict and re-committing the file that was in question. Cheers, Lori Shepherd - Kern Bioconductor Core Team Roswell Park Comprehensive Cancer Center Department of Biostatistics & Bioinformatics Elm & Carlton Streets Buffalo, New York 14263 ________________________________ From: Bioc-devel <bioc-devel-boun...@r-project.org> on behalf of Fabricio de Almeida <fabricio_almeidasi...@hotmail.com> Sent: Thursday, April 7, 2022 3:24 PM To: Krutik Patel <krutik.pa...@newcastle.ac.uk>; bioc-devel@r-project.org <bioc-devel@r-project.org> Subject: Re: [Bioc-devel] Hook declined Hi, Krutik. Did you check if the local version of your package is up to date with the remote? I think `git fetch --all` would solve your problem. This document can be helpful to you: https://secure-web.cisco.com/1gMIYYBfGMP2W4MLcP7L8fR2uStUheSMzyL94b7t6R7cfdaA6iYamCMixb5lzal4gqoC_K6OxCAJ4XDDw3n9BwQ9rKS-YYss6t0GMkrjGWcncN5NOC6AYtqdibK6_Xt0JtZphXroWG8G6GVNiURbmH209p0htc5XsWq-18OHBR9QEsShDUNCz7T9vuhhR3hwHyWSyZ2YOjboINd_WHxZ9nNfL7ohnPp8z4Y46gbik-hQqWAe8Vyr7F8lNMzdgwZc349trTRCjGlL8adb__066lZWrYB7j3eZI-fxaNff9wJzvTE2vtAMICdVwOvc2yUs-/https%3A%2F%2Fbioconductor.org%2Fdevelopers%2Fhow-to%2Fgit%2Fbug-fix-in-release-and-devel%2F Kind regards, ========================= Fabr�o de Almeida Silva, MSc. PhD student in Bioinformatics (Ghent University, Belgium) UGent-VIB Center for Plant Systems Biology Personal website: https://secure-web.cisco.com/1ck1T8grztoW3AD0B7cImI4ySuDuxeP1m_7T4k1hLcyPLtVkYVjKKa5nX_SNxPUkx9OrFaDd3-c1f0rG4etRUuJeAukhgN8jn_uSUuxB1s16ncJGy0BFJU0HF5ebSLyNVJcWJJ3441AF6FwJwtovM6I1nnbaQG_WIudchicJkXmHvyBAHC139CAQ6CTXJGOGfGs_dp3Gt6ZAZSeJ4uy21Z3nYdgH5I58v-zP9chBxZpU9dfR1cno3Qux03y8vxD0Mhy-qPtPPmB3Ojb797H-cr05CpWW4feErziRfP421NVslLjamDS1DgP5fU123MHbv/https%3A%2F%2Falmeidasilvaf.github.io ________________________________ De: Bioc-devel <bioc-devel-boun...@r-project.org> em nome de Krutik Patel <krutik.pa...@newcastle.ac.uk> Enviado: quinta-feira, 7 de abril de 2022 13:23 Para: bioc-devel@r-project.org <bioc-devel@r-project.org> Assunto: [Bioc-devel] Hook declined Dear Bioconductor, I am the maintainer of the TimiRGeN package and am trying to push an update but I get a message saying that the hook is declined. I am not too sure what this means but would appreciate any help on this matter. I have copied some code from me trying to git below. Many thanks, Krutik > git remote -v origin g...@github.com:Krutik6/TimiRGeN.git (fetch) origin g...@github.com:Krutik6/TimiRGeN.git (push) upsteam g...@git.bioconductor.org:packages/TimiRGeN.git (fetch) upsteam g...@git.bioconductor.org:packages/TimiRGeN.git (push) > git push upsteam master To g...@git.bioconductor.org:packages/TimiRGeN.git ! [rejected] master -> master (fetch first) error: failed to push some refs to 'g...@git.bioconductor.org:packages/TimiRGeN.git' hint: Updates were rejected because the remote contains work that you do hint: not have locally. This is usually caused by another repository pushing hint: to the same ref. You may want to first integrate the remote changes hint: (e.g., 'git pull ...') before pushing again. hint: See the 'Note about fast-forwards' in 'git push --help' for details. > git push origin master Everything up-to-date > git push upsteam master --force Counting objects: 76, done. Delta compression using up to 4 threads. Compressing objects: 100% (75/75), done. Writing objects: 100% (76/76), 8.86 KiB | 0 bytes/s, done. Total 76 (delta 59), reused 1 (delta 0) remote: FATAL: + refs/heads/master packages/TimiRGeN Krutik6 DENIED by fallthru remote: error: hook declined to update refs/heads/master To g...@git.bioconductor.org:packages/TimiRGeN.git ! [remote rejected] master -> master (hook declined) error: failed to push some refs to 'g...@git.bioconductor.org:packages/TimiRGeN.git' Krutik Patel, PhD Bioinformatician Research Associate Newcastle University, UK [[alternative HTML version deleted]] _______________________________________________ Bioc-devel@r-project.org mailing list https://secure-web.cisco.com/1SJMwVyA0bLZjNK4eJUUKEXtgtKczY72gMgZKmnz4XcBHHJmZUk6vV-4aosZD5ett7aQSDT04uhYo6QzutZLX3ckhFh0UD9glMxKs3L_pcSNVAcZW4qK1JqL0yOaJmOA3wyeyo0DtQArTrrHbQf_b3NvBkqiS0dDJHpHkflCldjMYexbuHt59kY3HrfZDOPQ3jZj_rYHXbJJsri99Lkev9721tzPSRAurXO3vj_AzpVuMc4lHAlSj1TJKA0UIoTUCBPl1nAdb17_f1Qdg97WQ-_WE63iQWxagxOCNJi0IKmDnDRvisovr6LOs6Xp-ZPPV/https%3A%2F%2Fstat.ethz.ch%2Fmailman%2Flistinfo%2Fbioc-devel [[alternative HTML version deleted]] This email message may contain legally privileged and/or confidential information. If you are not the intended recipient(s), or the employee or agent responsible for the delivery of this message to the intended recipient(s), you are hereby notified that any disclosure, copying, distribution, or use of this email message is prohibited. If you have received this message in error, please notify the sender immediately by e-mail and delete this email message from your computer. Thank you. [[alternative HTML version deleted]] _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
