Hi,
this question probably relates to Bioc docker images, thus asking here
first.
I am using biocthis GitHub action
<https://github.com/BBCG/epialleleR/blob/master/.github/workflows/check-bioc.yml>
and
I recently noticed that it started to fail with a BiocCheck message:
"ERROR: dependencies ‘GenomicRanges’, ‘BiocGenerics’, ‘GenomeInfoDb’,
‘SummarizedExperiment’, ‘VariantAnnotation’, ‘data.table’, ‘Rcpp’, ‘BH’,
‘Rhtslib’, ‘zlibbioc’ are not available for package ‘epialleleR’".
Does it relate to some changes in docker images, or BiocCheck::BiocCheck
configuration, or it's wrong invocation (in a pretty standard action
workflow)?
Best regards,
Oleksii
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