Thanks Herve! -----Ursprüngliche Nachricht----- Von: Hervé Pagès <hpages.on.git...@gmail.com> Gesendet: Dienstag, 26. Oktober 2021 21:53 An: Felix Ernst <felix.gm.er...@outlook.com>; bioc-devel@r-project.org Betreff: Re: [Bioc-devel] Windows specific error during CHECK
Hi Felix, On 26/10/2021 12:10, Felix Ernst wrote: > Hi Bioc-Team, > > I have got a problem with an error on Windows, which I am not able to debug. > > http://bioconductor.org/checkResults/devel/bioc-LATEST/mia/riesling1-c > hecksrc.html > > The testthat.out.fail output doesn't indicate any problems and the > testthat.out on other systems looks the same. > > Can someone provide any hint on what might be going on? Thanks in advance! Hmm.. even more puzzling is that if I go on riesling1, start R (in 64-bit mode), and run the tests manually, I don't see any problem: > test_check("mia") |======================================================================| 100% Time difference of 6.58 secs Initializing error rates to maximum possible estimate. selfConsist step 1 . selfConsist step 2 selfConsist step 3 selfConsist step 4 Convergence after 4 rounds. Initializing error rates to maximum possible estimate. selfConsist step 1 . selfConsist step 2 selfConsist step 3 selfConsist step 4 Convergence after 4 rounds. initial value 0.383462 iter 5 value 0.161655 iter 10 value 0.113278 final value 0.003270 converged initial value 0.000000 final value 0.000000 converged initial value 0.000000 final value 0.000000 converged initial value 0.000000 final value 0.000000 converged [ FAIL 0 | WARN 2 | SKIP 0 | PASS 630 ] So this only seems to happen in the context of 'R CMD check'. I wonder if the fact that we run 'R CMD check' with the --force-multiarch option (so the examples and tests are run for the 2 Windows archs) could be somehow related to the issue. Anyways, I won't be able to do more testing today because the builds on riesling1 are going to start in a few minutes. I'll try to get back to this tomorrow. Cheers, H. > > Best regards, > Felix > > [[alternative HTML version deleted]] > > _______________________________________________ > Bioc-devel@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/bioc-devel > -- Hervé Pagès Bioconductor Core Team hpages.on.git...@gmail.com _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
