Hi everyone, Answering my own question in case it's useful for anyone else (and someone please correct if any errors here).
Looks like the current best practice is to use Github Actions for automating package test with every git push. I came across Leonardo Collado-Torres' helpful package "biocthis" which sets up the basic BioC workflow in one command, along with a link to Jim Hester's talk on Github Actions at Rstudio Conf 2020. https://bioconductor.org/packages/release/bioc/html/biocthis.html https://www.jimhester.com/talk/2020-rsc-github-actions/ I'm now setting up my package so that a github push triggers a Github Action to build and test the package on bioc-devel, followed by building and pushing a Docker image with the package installed. SO looking forward to not having to do this manually anymore! Best,Shraddha On Mon, Sep 20, 2021 at 12:17 PM Shraddha Pai <shraddha....@utoronto.ca> wrote: > Hello BioC community, > > Is there a recommended set of tools / workflow for automating build and > check of a package update? I'm currently manually doing this. I've seen > some discussion from 2015 around Travis CI (which I've yet to use) but not > sure if that's current. > > If there's a workshop that covers this or notes from one, would > appreciate knowing. > > Separately, I use two Docker builds - one release, one devel version of > BioC - and manually launch each to run my tests. Is there an easier > workflow for checking the package in both release and devel branches or > setting up triggers for each? > > Thanks very much, > Shraddha > > -- > > *Shraddha Pai, PhD* > Principal Investigator, OICR > Assistant Professor, Department of Molecular Biophysics, University of > Toronto > shraddhapai.com; @spaiglass on Twitter > https://pailab.oicr.on.ca > > > *Ontario Institute for Cancer Research* > MaRS Centre, 661 University Avenue, Suite 510, Toronto, > Ontario, Canada M5G 0A3 > *@OICR_news* <https://twitter.com/oicr_news> | *www.oicr.on.ca* > <http://www.oicr.on.ca/> > > > > *Collaborate. Translate. Change lives.* > > > > This message and any attachments may contain confident...{{dropped:12}} _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
