Hi Anatoly,
What kind of data is in your SQLite database? The Bioconductor approach
for this is to provide the data as a separate data annotation or data
experiment package. More precisely, the data itself should go on
AnnotationHub or ExperimentHub. It should be associated with a "Hub
package", that is, a data package that documents it and explains how to
retrieve it from AnnotationHub or ExperimentHub. See vignettes in the
HubPub package for more information:
http://bioconductor.org/packages/HubPub
Best,
H.
On 24/08/2021 17:53, Nitesh Turaga wrote:
Hi,
We don’t have LFS support on the Bioconductor git server.
I would suggest finding an alternative.
Best,
Nitesh Turaga
Scientist II, Department of Data Science,
Bioconductor Core Team Member
Dana Farber Cancer Institute
On Aug 24, 2021, at 6:18 PM, Anatoly Sorokin <lpto...@gmail.com> wrote:
Hi all,
we have developed a package that provides access to the data in the locally
stored SQLite database. The GitHub Action successfully built the package,
but in Bioconductor, it got an error. The only reason for the error is that
the database itself is stored on GitHub via git-lfs, and the R code got an
lfs placeholder instead of the actual database.
Is it possible to activate lfs within Bioconductor automatic building
server? The database is tiny (80 Mb), but I don't want to have it as a
regular git object.
Thank you,
Anatoly
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