The current Bioconductor release is RELEASE_3_13 not RELEASE_3_12. Past release branches are frozen and will not accept commits. You should only be updating RELEASE_3_13 and master branches for this release cycle.
Lori Shepherd Bioconductor Core Team Roswell Park Comprehensive Cancer Center Department of Biostatistics & Bioinformatics Elm & Carlton Streets Buffalo, New York 14263 ________________________________ From: Bioc-devel <bioc-devel-boun...@r-project.org> on behalf of Clay Wright <wright.c...@gmail.com> Sent: Tuesday, July 27, 2021 3:44 PM To: bioc-devel <bioc-devel@r-project.org> Subject: Re: [Bioc-devel] pre-receive hook declined Hi, I am now encountering the following similar error trying to push a bugfix to my package. Does my account also need a similar update to Victor and Mike? Or is this something on my end? I just finally updated my github personal access tokens, maybe that's the issue? I haven't tried a fresh clone of the repository yet. git push origin RELEASE_3_12 Enumerating objects: 17, done. Counting objects: 100% (17/17), done. Delta compression using up to 4 threads Compressing objects: 100% (12/12), done. Writing objects: 100% (12/12), 1.48 KiB | 151.00 KiB/s, done. Total 12 (delta 9), reused 0 (delta 0), pack-reused 0 remote: FATAL: W refs/heads/RELEASE_3_12 packages/flowTime r.wright DENIED by fallthru remote: error: hook declined to update refs/heads/RELEASE_3_12 To git.bioconductor.org:packages/flowTime.git ! [remote rejected] RELEASE_3_12 -> RELEASE_3_12 (hook declined) error: failed to push some refs to 'git.bioconductor.org: packages/flowTime.git' Thanks! Clay On Fri, Jul 2, 2021 at 1:30 PM Victor Yuan <victor....@gmail.com> wrote: > It works for me as well now. Thanks! > > On Thu, Jul 1, 2021 at 8:21 AM Michael Love <michaelisaiahl...@gmail.com> > wrote: > > > That works for me. Thanks. > > > > Mike > > > > On Thu, Jul 1, 2021 at 2:07 PM Nitesh Turaga <nturaga.b...@gmail.com> > > wrote: > > > > > > Hi > > > > > > Please try again. You should not see this error anymore. > > > > > > This was a mistake on our end. > > > > > > Best, > > > > > > Nitesh > > > > > > > > > > > > Nitesh Turaga > > > Scientist II, Department of Data Science, > > > Bioconductor Core Team Member > > > Dana Farber Cancer Institute > > > > > > > On Jul 1, 2021, at 1:49 AM, Michael Love < > michaelisaiahl...@gmail.com> > > wrote: > > > > > > > > I'm getting a similar error, trying to push commits for a new package > > > > submission. So this is my first attempt to push to Bioc git servers > > > > for this package. > > > > > > > > After following instructions from > > > > https://secure-web.cisco.com/1zG69ZBuzV7x_en4chlgvb19YLMqAEk7U6ai5rDu9xpBwEhrMQex-fuviwZN6iTPYZAIuOYCT0y6swy9R-VpAohluoUDSNinbE8mr04UYClOnZRG_-58QOWQNJRHe1BwNZmeuwGL-ZcbYY4sgiXNhG-V1YcEvftuYFXf4emiBzFXb61tjbZlguHr39q93KL6enc_y5jtLkynm1DW_tXA9qeB_CZu2TqpngRUGfAqpO6iNeSM0rpLMIxlhTC-ZXp-MEoIdT5o9qhWz29dCeo04_fa2veI2o0uKB3JcbsfhepF3VBeKF3G7tWlSEuME4Lv5/https%3A%2F%2Fbioconductor.org%2Fdevelopers%2Fhow-to%2Fgit%2Fnew-package-workflow%2F > > > > ... > > > > > > > > spatialDmelxsim git:(main) > git push upstream main:master > > > > Enumerating objects: 20, done. > > > > Counting objects: 100% (20/20), done. > > > > Delta compression using up to 8 threads > > > > Compressing objects: 100% (10/10), done. > > > > Writing objects: 100% (12/12), 1.60 KiB | 1.60 MiB/s, done. > > > > Total 12 (delta 5), reused 0 (delta 0), pack-reused 0 > > > > remote: Traceback (most recent call last): > > > > remote: File > > "hooks/pre-receive.h00-pre-receive-hook-dataexp-workflow", > > > > line 90, in <module> > > > > remote: apply_hooks(hooks_dict) > > > > remote: File > > "hooks/pre-receive.h00-pre-receive-hook-dataexp-workflow", > > > > line 72, in apply_hooks > > > > remote: if hooks_dict["pre-receive-hook-merge-markers"]: # > enable > > hook > > > > remote: KeyError: 'pre-receive-hook-merge-markers' > > > > To git.bioconductor.org:packages/spatialDmelxsim > > > > ! [remote rejected] main -> master (pre-receive hook declined) > > > > error: failed to push some refs to > > > > 'git.bioconductor.org:packages/spatialDmelxsim' > > > > > > > [[alternative HTML version deleted]] > > _______________________________________________ > Bioc-devel@r-project.org mailing list > https://secure-web.cisco.com/1pgqiCMe5IoIMpivDRv93WyaWnkPF_i8E2tWaoA374pIpXIPd7TPONLnD6TzKpuv5Yg3ruIxtF6pHIrp4F_Y_qS1BR-UpEDwq1S1z3s5XjHR3upqp3b_7--EM_Ae4V7iEqFujioz16Chp5jaJsTHGYj0GoRjkE2owlb4OnGqFubSHwIrXYrigAVweUpU46uOJjUz3N3ScU2BWTCfXGDdGYXzMC0l6TF__FFRc0sV8hpmFr0Tk8aOvECW9WvZtgpbk8c9Fv0L0gYoRt0hkutHzqm3dfWox6YpM8A5p7QIERxij-wUDelbblMtY1hdgOliR/https%3A%2F%2Fstat.ethz.ch%2Fmailman%2Flistinfo%2Fbioc-devel > [[alternative HTML version deleted]] _______________________________________________ Bioc-devel@r-project.org mailing list https://secure-web.cisco.com/1pgqiCMe5IoIMpivDRv93WyaWnkPF_i8E2tWaoA374pIpXIPd7TPONLnD6TzKpuv5Yg3ruIxtF6pHIrp4F_Y_qS1BR-UpEDwq1S1z3s5XjHR3upqp3b_7--EM_Ae4V7iEqFujioz16Chp5jaJsTHGYj0GoRjkE2owlb4OnGqFubSHwIrXYrigAVweUpU46uOJjUz3N3ScU2BWTCfXGDdGYXzMC0l6TF__FFRc0sV8hpmFr0Tk8aOvECW9WvZtgpbk8c9Fv0L0gYoRt0hkutHzqm3dfWox6YpM8A5p7QIERxij-wUDelbblMtY1hdgOliR/https%3A%2F%2Fstat.ethz.ch%2Fmailman%2Flistinfo%2Fbioc-devel This email message may contain legally privileged and/or confidential information. If you are not the intended recipient(s), or the employee or agent responsible for the delivery of this message to the intended recipient(s), you are hereby notified that any disclosure, copying, distribution, or use of this email message is prohibited. If you have received this message in error, please notify the sender immediately by e-mail and delete this email message from your computer. Thank you. [[alternative HTML version deleted]] _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
