Hello developers, Recent changes to knitr are producing an ERROR on the build reports for many packages (software, experiment data, workflows). This is a legitimate ERROR and as a maintainer you should address the issue in any offending package as soon as possible. As an example, I fixed the Bioconductor maintained experiment data package GSE62944 this morning. The ERROR will read something like:
Error: processing vignette 'GSE62944.Rmd' failed with diagnostics: The 'rmarkdown' package should be installed and declared as a dependency of the 'GSE62944' package (e.g., in the 'Suggests' field of DESCRIPTION), because the latter contains vignette(s) built with the 'rmarkdown' package. Please see https://github.com/yihui/knitr/issues/1864 for more information. The ERROR message knitr produces is very explicit on how to fix and is very straightforward. Please remember to always do a version bump when making changes to your package in addition to updating the Suggest field in the DESCRIPTION. Cheers. Lori Shepherd Bioconductor Core Team Roswell Park Comprehensive Cancer Center Department of Biostatistics & Bioinformatics Elm & Carlton Streets Buffalo, New York 14263 This email message may contain legally privileged and/or confidential information. If you are not the intended recipient(s), or the employee or agent responsible for the delivery of this message to the intended recipient(s), you are hereby notified that any disclosure, copying, distribution, or use of this email message is prohibited. If you have received this message in error, please notify the sender immediately by e-mail and delete this email message from your computer. Thank you. [[alternative HTML version deleted]] _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
