Hi Christopher, It would be a good idea to remove the `LazyData: yes` from the DESCRIPTION.
https://bioconductor.org/developers/package-guidelines/#description <https://bioconductor.org/developers/package-guidelines/#description> One that is set make sure there is no pollution in function environments e.g., `sbt.model=scmod1.robust` in `R/genius.R`. Create an empty data environment where you can load package data for the function to use with `new.env(parent = emptyenv())`. Best, Marcel On 5/18/21 6:21 PM, Eeles, Christopher wrote: > Hello Bioc Core Team, > > I just noticed that one of our lab package, genefu, has a WARNING on devel > for all build machines. > > The warning is: > > LazyData DB of 5.0 MB without LazyDataCompression set > See �1.1.6 of 'Writing R Extensions' > > I wanted to make sure that this will not affect the inclusion of genefu in > the 3.13 release. > > I have already started researching the issue and will push a fix as soon as > the release is complete on Thursday. > > --- > Christopher Eeles > Software Developer > BHK > Laboratory<https://nam05.safelinks.protection.outlook.com/?url=http%3A%2F%2Fwww.bhklab.ca%2F&data=02%7C01%7Ctao.qing%40yale.edu%7Ce130a2d3267b46a945ab08d79f7660ad%7Cdd8cbebb21394df8b4114e3e87abeb5c%7C0%7C0%7C637153203084194682&sdata=nGXPfLnlbcaLQdDOHFDmp4lZ7lD9H29uFeVCAqjT9Ds%3D&reserved=0> > Princess Margaret Cancer > Centre<https://nam05.safelinks.protection.outlook.com/?url=https%3A%2F%2Fwww.pmgenomics.ca%2Fpmgenomics%2F&data=02%7C01%7Ctao.qing%40yale.edu%7Ce130a2d3267b46a945ab08d79f7660ad%7Cdd8cbebb21394df8b4114e3e87abeb5c%7C0%7C0%7C637153203084194682&sdata=b2ZjA%2FPDKjTZmAWGbnQAY1SjVtCDQGQmXu2Thz%2FXQkI%3D&reserved=0> > University Health > Network<https://nam05.safelinks.protection.outlook.com/?url=http%3A%2F%2Fwww.uhn.ca%2F&data=02%7C01%7Ctao.qing%40yale.edu%7Ce130a2d3267b46a945ab08d79f7660ad%7Cdd8cbebb21394df8b4114e3e87abeb5c%7C0%7C0%7C637153203084204675&sdata=NH1nVdRr9SsFOtMYhC%2BaXpdZiC7Nm%2BaUt37NvDWBfCg%3D&reserved=0> > > > > > > Any review or distribution by anyone other than the person for whom it was > originally intended is strictly prohibited. > If you have received this e-mail in error, please contact the sender and > delete all copies. > Opinions, conclusions or other information contained in this e-mail may not > be that of the organization. > > If you feel you have received an email from UHN of a commercial nature and > would like to be removed from the sender's mailing list please do one of the > following: > (1) Follow any unsubscribe process the sender has included in their email > (2) Where no unsubscribe process has been included, reply to the sender and > type "unsubscribe" in the subject line. If you require additional information > please go to our UHN Newsletters and Mailing Lists page. > Please note that we are unable to automatically unsubscribe individuals from > all UHN mailing lists. > > > Patient Consent for Email: > > UHN patients may provide their consent to communicate with UHN about their > care using email. All electronic communication carries some risk. Please > visit our website > here<https://www.uhn.ca/PatientsFamilies/Patient_Safety_Advocacy/Privacy/Documents/Email_consent_and_safety.pdf> > to learn about the risks of electronic communication and how to protect your > privacy. You may withdraw your consent to receive emails from UHN at any > time. Please contact your care provider, if you do not wish to receive emails > from UHN. > > [[alternative HTML version deleted]] > > > _______________________________________________ > Bioc-devel@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/bioc-devel > > Unsubscribe > > It appears that you have subscribed to commercial messages from this > sender. To stop receiving such messages from this sender, please > unsubscribe > <http://secure-web.cisco.com/1lBSXrH5hVjuH3-oc2I8NYekmxreCRjMdBCESkhqsfPrcWfc8Ab0kjvn_Z_XrrywP-PCmcemZQIcG9qS5MN2iEXcHw16ZoAOf-To94IhLrODOlwxcAI8b36l90cL8uTmDa7F2eBjvSqKN49SkTyST48O4qon7Zqy5URTI0-Wo8ieqL1l5jMEgIt1yMIlo_9vSl6CuEpz30Ypcz6_LoGl-amdxx7WVeqaqDzUC3_f5UcFZHsqCQnQ8BWkaLyZdedEwzoQZsecXMJK-HyQv6dVV-r6gxwEz92Or-13j2tjyQR0tTN3ZDDTqRlwUUgL5LAW391b2uQMxKpRvt7dELVUbyaz7KwN6rAVI83Qh4EEs8lGu6KE3YvngyknLH9zdV4XbIscFxYpfehnxhjlxr8T5EL7XJDK3J347biPWsngxpQg/l47%3Ahttps%3A%2F%2Fstat.ethz.ch%2Fmailman%2Foptions%2Fbioc-devel59%3Amailto%3Abioc-devel-request%40r-project.org%3Fsubject%3Dunsubscribee> > --- Marcel Ramos Bioconductor Core Team Roswell Park Comprehensive Cancer Center Dept. of Biostatistics & Bioinformatics Elm St. & Carlton St. Buffalo, New York 14263 This email message may contain legally privileged and/or...{{dropped:4}} _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
