It's because Bioconductor won't be building (supporting) R-4.2 (R-devel) until
six months from now, even in the 'devel' branch of Bioconductor. Bioc 3.14
(once it becomes available after the Bioconductor release) will use R 4.1 and
the table will be updated to have line 34 as 3.14 / 4.1. There will be an entry
3.15/4.2/future, but there won't be a 3.15...
Martin
On 5/4/21, 8:21 AM, "Bioc-devel on behalf of Wolfgang Huber"
<bioc-devel-boun...@r-project.org on behalf of wolfgang.hu...@embl.org> wrote:
Hi,
I get
> BiocManager::install()
Error: Bioconductor version '3.13' requires R version '4.1'; R version is
too new; see
https://bioconductor.org/install
and this appears to be because of the last line in
> BiocManager:::.version_map()
Bioc R BiocStatus RSPM MRAN
…(29 lines omitted)….
30 3.10 3.6 out-of-date <NA> <NA>
31 3.11 4.0 out-of-date <NA> <NA>
32 3.12 4.0 release <NA> <NA>
33 3.13 4.1 devel <NA> <NA>
34 3.13 4.2 future <NA> <NA>
Shouldn’t it say “3.14” in the second element of the last line?
> sessionInfo()
R Under development (unstable) (2021-05-04 r80261)
Platform: x86_64-apple-darwin20.4.0 (64-bit)
Running under: macOS Big Sur 11.3
Matrix products: default
BLAS: /Users/whuber/R/lib/libRblas.dylib
LAPACK: /Users/whuber/R/lib/libRlapack.dylib
locale:
[1] en_US.UTF-8/UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] BiocManager_1.30.12 fortunes_1.5-4
loaded via a namespace (and not attached):
[1] compiler_4.2.0 tools_4.2.0
and I seem to have the most recent version of BiocManager as of today’s
https://cran.r-project.org/web/packages/BiocManager/index.html
——————
Btw the result of
> BiocManager:::.get_R_version()
[1] ‘4.2.0’
is probably technically not correct, as it’s r-devel.
Kind regards
Wolfgang
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