Hello,
I've recently noticed that the nightly builds for the slingshot package
(both release and devel versions) are failing on merida1, but I can't
figure out why. It has something to do with the tests, but I am unable to
reproduce the error. Here is the build report for the release version:
http://bioconductor.org/checkResults/release/bioc-LATEST/slingshot/merida1-checksrc.html
R CMD check provides this output:
* checking tests ...
Running ‘testthat.R’
ERROR
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(slingshot)
Loading required package: princurve
>
> test_check("slingshot")
And the slingshot.Rcheck/tests/testthat.Rout.fail output is similar:
R version 4.0.5 (2021-03-31) -- "Shake and Throw"
Copyright (C) 2021 The R Foundation for Statistical Computing
Platform: x86_64-apple-darwin17.0 (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library(testthat)
> library(slingshot)
Loading required package: princurve
>
> test_check("slingshot")
There's not a lot of information to go on, so has anybody else seen this
kind of behavior? I went through the list of packages with errors in the
nightly builds and didn't see anything exactly like this, although
the paxtoolsr package was failing in a similar way (seemingly due to a Java
issue?). Any help would be greatly appreciated.
Thanks,
Kelly Street
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