Hi there, What about including the "_pkgdown.yml" file in the ".Rbuildignore" file? Would this somehow help "avoiding any issues with these external configurations and Bioconductor"?
Thanks David On Tue, Apr 6, 2021 at 5:05 AM Andris Jankevics <a.jankev...@bham.ac.uk> wrote: > Haven't used this, but I think you could use Github Action to merge master > branch in the branch for pkgdown whenever changes on master are made. > > https://github.com/marketplace/actions/merge-branch > > BW, > Andris > > -----Original Message----- > From: Bioc-devel <bioc-devel-boun...@r-project.org> On Behalf Of Murphy, > Alan E > Sent: 06 April 2021 16:24 > To: bioc-devel@r-project.org > Subject: [Bioc-devel] Best practice use pkgdown, docker with Bioconductor > > Hi all, > > I'm working on the development of (EWCE)[ > https://github.com/NathanSkene/EWCE] and have a question regarding a > reviewer note. My package currently uses pkgdown to create a website > through the master branch. I also create and push a new docker image from > the main branch when the package successfully builds on travis. > > My reviewer has asked to remove the related files > _pkgdown.yml,Dockerfileanddocker_push from my master branch to avoid any > issues with these external configurations and Bioconductor. My reviewer has > suggested to put these in another branch. It's not clear to me how best to > do this? Ideally, if they are in a separate branch, is there a way to run > them once there is an update and successful build on the master branch? If > this isn't possible, is there a way to avoid manually duplicating new > changes in the master branch in this separate branch and instead, just push > the changes from master to this separate branch and trigger pkgdown and > docker build that way? Sorry, I realise this last part more so relates to > github commands but I was thinking someone else has probably already foudn > a way around this issue. > > Kind regards, > Alan. > > Alan Murphy > Bioinformatician > Neurogenomics lab > UK Dementia Research Institute > Imperial College London > > [[alternative HTML version deleted]] > > _______________________________________________ > Bioc-devel@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/bioc-devel > > _______________________________________________ > Bioc-devel@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/bioc-devel > [[alternative HTML version deleted]] _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
