The Bioconductor Team is continuing to identify packages that will be
deprecated in the next release to allow for the Bioconductor community to
respond accordingly. The list will be updated monthly. This is the current list
of deprecated packages for Bioc 3.13 :
User Requested
Software:
BiocCaseStudies
RchyOptimyx
yaqcaffy
ExperimentData:
ceu1kg
ceu1kgv
ceuhm3
cgdv17
dsQTL
hmyriB36
yri1kgv
Workflow:
eQTL
Unmaintained/Nonresponsive
Software:
affyQCReport
APAlyzer
bigmemoryExtras
CrossICC
DBChIP
dexus
EasyqpcR
genoset
Imetagene
Polyfit
proFIA
RDAVIDWebService
rnaSeqMap
seqplots
SSPA
ExperimentData:
DmelSGI
facsDorit
gskb
JctSeqData
plasFIA
It should be noted, we did try to reach out to these package maintainers
multiple times and they were either unresponsive or had emails bounce. We
encourage anyone that is familiar with a package maintainer on this list to
reach out to them and notify them directly. Packages can be un-deprecated if a
maintainer fixes the package to build/check cleanly before the next release and
requests un-deprecation on the bioc-devel@r-project.org mailing list.
Lori Shepherd
Bioconductor Core Team
Roswell Park Comprehensive Cancer Center
Department of Biostatistics & Bioinformatics
Elm & Carlton Streets
Buffalo, New York 14263
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