Hi Simo, I need more details about “rstan” and the configuration.
I’m trying to figure it out. Nitesh On Oct 20, 2020, at 12:20 PM, Simo Kitanovski <simo.kitanov...@uni-due.de<mailto:simo.kitanov...@uni-due.de>> wrote: Dear Nitesh, as mentioned in my previous email the error persists in devel. Best, Simo On 13.10.20 4:58 PM, Turaga, Nitesh wrote: Hi Simo, Can you tell me how you configured rstan on your windows machine? Either way, don’t worry about the release version on Windows, there seems to be a version which has propagated through. But the issue persists in devel, which you’ll need to fix. The issue seems to be in --- failed re-building 'IgUsageCaseStudies.Rmd' In that windows machine it’s likely because it exceeds the number of cores availablehttps://github.com/snaketron/IgGeneUsage/blob/master/vignettes/IgUsageCaseStudies.Rmd#L227<https://secure-web.cisco.com/16nzh5XsG1ICN95000rvtRhEBdGFGmQe3m6sfr0t0oiipFiGIfBOdR-PR04cwWWJZKVoBleA3_MCwY2_0v5jhunj5yIQhdTBonlczxdnhs7tFuASIDqTNfGmwdjrgq3phbrsryzWq_v7wO0TlT0BiFfTf0MTEssb0NRKa8UnwlktkOmLhxUgtvFj8X3Lx_XFdtNqgz3fuMak5T3M3fu_-DdPADPJslb_njxjFvpWxVxzckwzpHsyJLKMkwAMmrcvuFokgCEPKLLS776ygsMAKWJc8aECoq2HHcJ39S9Bv6Fn9ItP4FAnNQb1WOGXMEy_oxRPNBr269xQnaEMkmfvoGQ/https%3A%2F%2Fgithub.com%2Fsnaketron%2FIgGeneUsage%2Fblob%2Fmaster%2Fvignettes%2FIgUsageCaseStudies.Rmd%23L227> . Try setting mcmc.cores = 1. Best, Nitesh From: Simo Kitanovski <simo.kitanov...@uni-due.de><mailto:simo.kitanov...@uni-due.de> Date: Friday, October 9, 2020 at 7:09 PM To: "Turaga, Nitesh" <nitesh.tur...@roswellpark.org><mailto:nitesh.tur...@roswellpark.org> Subject: Re: IgGeneUsage Bioconductor package Dear Nitesh Turaga, I did not hear back from you concerning IgGeneUsage and genphen and their problem with the CRAN package rstan. Given that I cannot solve the errors with my packages without reconfiguring how rstan was installed on tokay2, I am stuck with the errors. Any suggestions? Best, Simo On 06.10.20 2:33 AM, nitesh.tur...@roswellpark.org<mailto:nitesh.tur...@roswellpark.org> wrote: IgGeneUsage Bioconductor Package Report Nitesh Turaga1 1Roswell Park Comprehensive Cancer Center, Buffalo, NY, USA October 05, 2020 Package: IgGeneUsage ________________________________ Dear Simo Kitanovski, I am contacting you concerning the IgGeneUsage package, on the release and devel branch of Bioconductor, for which you are listed as the maintainer. The latest build/check report shows that your package is failing on one or more platforms. Please resolve the issues for your package’s continued inclusion in Bioconductor. https://bioconductor.org/checkResults/release/bioc-LATEST/IgGeneUsage/<https://secure-web.cisco.com/1cWWSuKaXaMm3z3KPV0uvEgXX5KrrDc5F5EBaDgP7m7UQdi9GMiYNdp4TWyDwaIZDLMdDexBU00Man6r6F0uCZv6h5lPvljhg599tYojoJ8V59ePQDEbQfgk8MnKGgU7zDAaJcL03A0kfqyg53LcasowRRa3svhOPSF4HSz7OVYpR_h2E9YXCiRRcEPiKFtWAkO49joC1EYtzNYwj7PNZt6-6HOYDfvH2vHpVKe2YjdgMttdWB97juGLcc7FGZfo-ZvQoq92IohzJgU8jlpebMXB7prg5is4zycXW3bdrxZ2yGwvQqGPIQfXWRGQoXJCxDytnzSmer3-7MN-uDnY6fw/https%3A%2F%2Fbioconductor.org%2FcheckResults%2Frelease%2Fbioc-LATEST%2FIgGeneUsage%2F>https://bioconductor.org/checkResults/devel/bioc-LATEST/IgGeneUsage/<https://secure-web.cisco.com/17rFifncearVbAJ9PKNWi1raZSOGuyxLunr6pqjFdiSpJu1nz9ZC2ektotS-uVE7rGQ5_Z8wqpcu4cNvE-xKiW5xB2Pk85nReNrVMf-YJmdgf_hNVOt-IgZtmunNkIGaxyYij9njKQqOv6oI3m0E3U-koNXZJDQtUc5LqHcSyUxq_ySmgMQuoB7gLOdwqD4pZBSCCtlQPaKZy5hLaiNGzFbLdsiyxxCugdUqIu1fYcCz28xBJAfumV1UswxPX5Gao_yOMdrEh3u5BT_FWAFOo4uMm_NFkyKzc08DLGhyhVWsAkr8-WLS3NGiulQntAOT1JK_bsRIssKS56lFafEL7zA/https%3A%2F%2Fbioconductor.org%2FcheckResults%2Fdevel%2Fbioc-LATEST%2FIgGeneUsage%2F> Please let me know if you have any questions. Regards, Nitesh ________________________________ Bioconductor Core Team Roswell Park Comprehensive Cancer Center Dept. of Biostatistics & Bioinformatics Elm & Carlton Streets Buffalo, New York 14263 This email message may contain legally privileged and/or confidential information. If you are not the intended recipient(s), or the employee or agent responsible for the delivery of this message to the intended recipient(s), you are hereby notified that any disclosure, copying, distribution, or use of this email message is prohibited. If you have received this message in error, please notify the sender immediately by e-mail and delete this email message from your computer. Thank you. This email message may contain legally privileged and/or confidential information. 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