The latest version is now reflected in the build report and on the package landing page. Please again review timings on this page that the landing pages are only updated after a successful build with version bump hence why the full update on the build report and landing pages can take up to 48 hours
http://bioconductor.org/developers/how-to/troubleshoot-build-report/ Lori Shepherd Bioconductor Core Team Roswell Park Comprehensive Cancer Center Department of Biostatistics & Bioinformatics Elm & Carlton Streets Buffalo, New York 14263 Cheers, ________________________________ From: Xiaowen Chen <xiaowen.c...@jax.org> Sent: Saturday, October 17, 2020 2:40 PM To: Martin Morgan <mtmorgan.b...@gmail.com>; Kern, Lori <lori.sheph...@roswellpark.org>; bioc-devel@r-project.org <bioc-devel@r-project.org> Subject: Re: [Bioc-devel] [EXTERNAL]Re: A question about r package update Yes, the check report is the one I lately push, But the epihet on the website" bioconductor.org/packages/devel/bioc/html/epihet.html " is not the one latest through check the vignettes. So now I updated the version in DESCRIPTION to 1.5.3, and push again and hope I can see the latest version on the website " bioconductor.org/packages/devel/bioc/html/epihet.html " Thank you. Best, Xiaowen On 10/17/20, 10:26 AM, "Martin Morgan" <mtmorgan.b...@gmail.com> wrote: Packages are built nightly, so you must usually wait ~24 - 48 hours for your commits to be reflected in the build report. Sometimes issues prevent the build report from being processed, so on the build overview page such as http://secure-web.cisco.com/1Ktwhc-1fOD537-R0w6DZa7xx108gqW4GXONiL_FjB0P1DtGxH_Ts1H15R1oCNf20fTFBPForRU_uweA01_tMeLAiwRSKQ0Q_xCj2Z8jLcpBwyrTHakwW74B7Ej_esnheP6s97mLq0G8HufjxWCAMyPXrqxWK_2H0JRC050653eLkp30aJip-dZMb20BmCg6xzhw1Mqd_Pu4vxReOYEhWo_pazA4USiF82BebUOt0QWntEYAreDEZS0vPfkJgw6aINuP68uLLmrlKKymPFPGzZyK5M0xoICUDwMpvAJBzlGs8GH5WWpS6wQFicGIs3S9K/http%3A%2F%2Fbioconductor.org%2FcheckResults%2Fdevel%2Fbioc-LATEST%2F compare - 'This page generated on...' - 'Approx snapshot date...' and on individual package pages such as http://secure-web.cisco.com/1zdf9ads4VET4y3GW4X3aCfi4cSdGfENmczEK6FJ9MQ-WEKuGct0QO0SntkvNKCDJZ37-wOYUmiXrFyshe1xTL5sQgKZLac_kzk0nrloIqi13Pc10llxMUAxmJ_-ND5PH6hH_TxA9lo4zvnrATrDRn-cFkx-n_mqGlOeOTrj9xBy7o-KJcXDInohJncsDSiEJYNz4sfxfTCnL-eSaoLBf1RhXMP8_nUU8dEbmTm_CFielxiaHfiyL7icRTqu0la8VqPm-a13wu_5O6JShbyKShYvUTZ4vSL14pj0zExjvkRHMMqcjMOpGZbRRGlqt1Rge/http%3A%2F%2Fbioconductor.org%2FcheckResults%2Fdevel%2Fbioc-LATEST%2Fepihet%2F look for - 'Snapshot date...' - 'Last commit...' If your last commit (`git log --oneline`) was after the snapshot date, then changes you made will not be reflected in the build report. Because of the delay in the nightly builds, it makes sense to do your best to ensure that commits are correct, ensuring that your R and Bioconductor packages are current for the version that you are committing to, and running R CMD build <pgk> R CMD check <pkg_....tar.gz> locally before pushing changes. Martin On 10/16/20, 5:08 PM, "Bioc-devel on behalf of Xiaowen Chen" <bioc-devel-boun...@r-project.org on behalf of xiaowen.c...@jax.org> wrote: Hi Kern, I checked the epihet on the website �bioconductor.org/packages/devel/bioc/html/epihet.html�. I saw its version is 1.5.2 Unfortunately, it is not the one I push this morning. It is not the latest one. Could you help me check what�s wrong here? I am so sorry about that. Best, Xiaowen From: "Kern, Lori" <lori.sheph...@roswellpark.org> Date: Friday, October 16, 2020 at 9:54 AM To: Xiaowen Chen <xiaowen.c...@jax.org>, "bioc-devel@r-project.org" <bioc-devel@r-project.org> Subject: [EXTERNAL]Re: A question about r package update We apologize. It was announced on the Bioconductor slack but we forgot to post on the bioc-devel mailing list. There was an issue with the builders and there was no report generated yesterday Thursday October 15. The issue should be resolved and we expect a build report today. I do see 1.5.2 in our git repository so it should be reflected in the report today. We apologize for the confusion and the inconvenience Cheers, Lori Shepherd Bioconductor Core Team Roswell Park Comprehensive Cancer Center Department of Biostatistics & Bioinformatics Elm & Carlton Streets Buffalo, New York 14263 ________________________________ From: Bioc-devel <bioc-devel-boun...@r-project.org> on behalf of Xiaowen Chen <xiaowen.c...@jax.org> Sent: Friday, October 16, 2020 9:49 AM To: bioc-devel@r-project.org <bioc-devel@r-project.org> Subject: [Bioc-devel] A question about r package update Hi bioc-devel, I am sorry for email you so often, this morning I checked the check report website, it did not change. And I noticed that the data is �This page was generated on 2020-10-14 11:07:41 -0400 (Wed, 14 Oct 2020).� Indeed I pushed my package on 2020-10-14. But its version is 1.5.2, not 1.5.1 shown in the website. Even it is not the one I pushed, now it have been two days. So this morning I push epihet again. The command is as following (base) [chenx@helix epihet]$ git remote add upstream g...@git.bioconductor.org:packages/epihet.git (base) [chenx@helix epihet]$ git fetch --all Fetching origin Fetching upstream Enter passphrase for key '/home/c-chenx/.ssh/id_rsa': From git.bioconductor.org:packages/epihet * [new branch] RELEASE_3_10 -> upstream/RELEASE_3_10 * [new branch] RELEASE_3_11 -> upstream/RELEASE_3_11 * [new branch] RELEASE_3_9 -> upstream/RELEASE_3_9 * [new branch] master -> upstream/master (base) [chenx@helix epihet]$ git checkout master Already on 'master' (base) [chenx@helix epihet]$ git merge origin/master Already up-to-date. (base) [chenx@helix epihet]$ git merge upstream/master Already up-to-date. (base) [chenx@helix epihet]$ git push upstream master Enter passphrase for key '/home/c-chenx/.ssh/id_rsa': Everything up-to-date (base) [chenx@helix epihet]$ git push origin master Everything up-to-date Previously, when I typed �git merge upstream/master�, it returned something like this Merge made by recursive. DESCRIPTION | 2 +- NEWS | 7 +++++-- 2 files changed, 6 insertions(+), 3 deletions(-) mode change 100755 => 100644 DESCRIPTION So I am curious whether epihet1.5.2 successfully push to upstream? Could you help me to check? Since tomorrow is weekend. Thank you pretty much. Best, Xiaowen --- The information in this email, including attachments, may be confidential and is intended solely for the addressee(s). If you believe you received this email by mistake, please notify the sender by return email as soon as possible. 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